Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02351 ATGAGCTTATTGAGGCCTTCTGCAATATACAACTTCGTAACAAGTTATCCTTCGCTGCGATGGATGCCGTGTCAGAGTTGGGGCTTCCTTCGATGGCCGGGTCTCGACGGATTCCTTAGGCTTATGGTCGTTGGACTTCTCTGGTCCACGTTCTCCGAGCTTCGCTTCATACCTTCCTCTTCTATGTTCCCCACTCTTCGTGTTGGTGATCGAATTATTGTGGAAAAGGCTTCATATTATATCAAGAATCCTTCTATACATGATATTATAATATTTAAGGATCCAACACAGTTATATGGAGAAAACACAGAAACTGTTTTTATTAAGAGAATTGTAGCAAAAGCAGGAGACGCTGTTGAGGTTCATCATGGGGTACTCTACGTCAATGGTGTTGCTCAGCAGGAAGATTTCATAGCACAACCACCAGCATACACAATTCCATTAACCACTGTGCCCAATGACCATGTTTATGTGCTAGGCGATAATCGTAATAACAGTTATGATTCTCATGTGTGGGGACCACTTCCTATGAAGAACATAATTGGAAGATATGTCACTTGTTATCATAGACCAACAAACATTTGA 585 0.4171 MSLLRPSAIYNFVTSYPSLRWMPCQSWGFLRWPGLDGFLRLMVVGLLWSTFSELRFIPSSSMFPTLRVGDRIIVEKASYYIKNPSIHDIIIFKDPTQLYGENTETVFIKRIVAKAGDAVEVHHGVLYVNGVAQQEDFIAQPPAYTIPLTTVPNDHVYVLGDNRNNSYDSHVWGPLPMKNIIGRYVTCYHRPTNI 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02351 194 ProSitePatterns Signal peptidases I serine active site. 59 66 IPR019756 GO:0004252|GO:0016020
Viun9g02351 194 SUPERFAMILY LexA/Signal peptidase 51 188 IPR036286 -
Viun9g02351 194 Pfam Signal peptidase, peptidase S26 39 186 IPR019533 GO:0004252|GO:0006465
Viun9g02351 194 CDD S26_SPase_I 53 183 IPR019533 GO:0004252|GO:0006465
Viun9g02351 194 ProSitePatterns Signal peptidases I signature 3. 156 169 IPR019758 GO:0004252|GO:0016020
Viun9g02351 194 Gene3D Umud Fragment, subunit A 59 191 - -
Viun9g02351 194 PRINTS Bacterial leader peptidase 1 (S26A) family signature 151 170 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g02351 194 PRINTS Bacterial leader peptidase 1 (S26A) family signature 50 66 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g02351 194 PRINTS Bacterial leader peptidase 1 (S26A) family signature 107 119 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g02351 194 NCBIfam signal peptidase I 41 188 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g02351 194 PANTHER SIGNAL PEPTIDASE I 37 192 IPR000223 GO:0006508|GO:0008236|GO:0016020
Viun9g02351 194 FunFam Peptidase/ serine-type peptidase 59 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02351 Viun-Chr9 33002105 33005062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02351 62 183 MADS-box Gene Family AT1G29960 30.894 1.29e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02351 K03100 - gmx:100306121 350.903