LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g02327	ATGCCTCAAACGGGTCCTACCGGGGAACCCACTCACGGAGGCTCCGGTGGCCGCAAGGTGGTGGTGGGGGTGAAGATGGACTCCCCCAGCAAGGAATTGCTCACCTGGGCTTTGGTCAAAGTGGCTCACCCTGGTGACACCGTGGTTGCTCTGCATGTTCTTGGGAACCAGGATACTGTGAATGGAGACGGGAAATCTTCGCTGCTTTCGCTTGTCAAGGCGTTTGACTCTGTTCTTGCCGTTTATGAAGGATTCTGCAACTTGAAACAGGTCGACCTCAAACTCAAAATTTGCCGTGGTTCATCGGTGAAGAAAATTTTGGTTCGAGAAGCAAATAGTTATTCCGCAACTCATGTTGTGGTCGGAACAACTCATGGTCTGCATAGAATCCGGTCATCTACCGTTGTAGCTAAATACTGTGCTAAGAAGTTGTCCAAGGATTGTTCTGTTCTCGCTGTTAACAATGGGAAGGTTGTGTTCAAACGCGACAGCTCGCCACCAAGTGTTGCTGACTTACAAGGGATTGATCGTCAACACAGAAATGGTTTGGTCGGTTCGATTCATTGGACACTCAGTAGGAATACAAAAGTTCTAAGTGATGACAATTCAGGGACGGATGCTGATGAGAAGAAACCTGGCCAAATTTCAGATCACAGTTTAGCTAAGTTTTTCCTAGATTCGACAGAAACTGTTAGAAAACCGAGCTGTTCAGTTTGTGGCACAACCTTGGCATTGCCAGACCCTTCATGCTACCAATCTGCAGAAGGGGTTTCTGGTGATGATGGTAAAGAGAATTCCTTGGCTATAGTGCCAGTGCAAGTGCAACCCACTGTTGCTGCAGAAGCGGAATTGAAACCTGGTTGGCCACTACTACACCGTAGAATTATATCGGACACTCAATCTACTGATAGATCATTGACGCACCCCGAGATTTCCGTGGTCCAGTGGGCAATGAGGTTACCTTCTAGAAATATTTCATATGCTTCAGATCGTGATGAAAAGTCTGAAACCTGTGACCGAAGTTTAGATCAACCTGCGGCTTTAGATAGGGAAAGTGGTGCTCTTGTTCCAGTAGATTCTGAAATCAGAACAGCTTCTTCGCCAGAAAGCAATTCAAGAAACATTCCTAAAGAATTGGAGGGCCTTCATGAGAAGTACTCCTCAACTTGTAGATTGTTTGGGTACCAAGATCTTGTATCTGCCACATCAAATTTCTTACCGGAAAACTTTATTGGGAAAGGAGGAAGCAGTCAGGTTTTTAGAGGCTGCCTTCCTGATGGCAAGGAACTTGCTGTCAAGATTCTAAAGCCTTCTGAAGATGTATTGAAGGAATTTATTCTGGAAATAGAAATCATCACTACCTTGCATCACAAAAACATAATTTCCCTCCTGGGATTCTGCTTTGAGAATGGCAAATTTTTTCTGGTTTATGATCTCTTATCAAGGGGAAGCCTTGAAGAGAATCTTCATGGTAATAAGAAAAATTCACTTACGTTTGGTTGGTCGGAGAGATATAAGGTAGCTGTGGGTATTGCTGAGGCTTTAAATTATCTGCATTCTAAAGATGATCAACCCGTGATCCATCGGGATGTAAAGTCATCAAATGTGTTATTATCCGAGGATTTTGAACCCCAGCTGTCTGATTTTGGACTGGCAAAATGGGCATCAACCTCGTCATCACACATAACCTGCACAGATGTTGCTGGAACTTTTGGTTACTTGGCTCCTGAATACTTCATGTACGGCAAAGTAAATGATAAGATTGATGTTTATGCATTTGGCGTGGTGCTCCTCGAACTTCTTTCAGGGAGAAGGCCCATAAACCGTGATTATCCTAAAGGCCAAGAAAGTCTTGTCATGTGGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTTACAATTGTTAGATCCTAGTTTGGGTGAAAACTATGATCATGAGGAGATGGAAAAGATGGTGTTGGCAGCCACACTGTGTATCAAACGTGCTCCGAGGGCTAGGCCTCAAATGAACATTATCTTAAAGCTCCTTCAAGGTGACATTGAAACAGTGAAGTGGGCAAGGTTAGAAGTTAAGAATGGTTTGGATGCAGCAGAAACGGTTGATGATGAAGCGTGTCCACCTAGTGATAATCTACAGTCACATTTAGATCTTGCACTGCGTGATTTGGTGGAGGAGTCACTCTCCATGTGCAGTGTTGAGCAGGGTTTGACATTGGAGGACTACTTGAGAGGCCGTTGCAGCCGTGCATCAAGCTTTGACTGA	2262	0.4443	MPQTGPTGEPTHGGSGGRKVVVGVKMDSPSKELLTWALVKVAHPGDTVVALHVLGNQDTVNGDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGSSVKKILVREANSYSATHVVVGTTHGLHRIRSSTVVAKYCAKKLSKDCSVLAVNNGKVVFKRDSSPPSVADLQGIDRQHRNGLVGSIHWTLSRNTKVLSDDNSGTDADEKKPGQISDHSLAKFFLDSTETVRKPSCSVCGTTLALPDPSCYQSAEGVSGDDGKENSLAIVPVQVQPTVAAEAELKPGWPLLHRRIISDTQSTDRSLTHPEISVVQWAMRLPSRNISYASDRDEKSETCDRSLDQPAALDRESGALVPVDSEIRTASSPESNSRNIPKELEGLHEKYSSTCRLFGYQDLVSATSNFLPENFIGKGGSSQVFRGCLPDGKELAVKILKPSEDVLKEFILEIEIITTLHHKNIISLLGFCFENGKFFLVYDLLSRGSLEENLHGNKKNSLTFGWSERYKVAVGIAEALNYLHSKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLSGRRPINRDYPKGQESLVMWASPILNSGKVLQLLDPSLGENYDHEEMEKMVLAATLCIKRAPRARPQMNIILKLLQGDIETVKWARLEVKNGLDAAETVDDEACPPSDNLQSHLDLALRDLVEESLSMCSVEQGLTLEDYLRGRCSRASSFD	753

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g02327	753	Pfam	Protein kinase domain	409	670	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun9g02327	753	MobiDBLite	consensus disorder prediction	327	350	-	-
	Viun9g02327	753	CDD	USP_Like	19	153	-	-
	Viun9g02327	753	SMART	serkin_6	405	676	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun9g02327	753	Gene3D	Phosphorylase Kinase; domain 1	368	479	-	-
	Viun9g02327	753	Gene3D	HUPs	17	155	IPR014729	-
	Viun9g02327	753	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	18	157	-	-
	Viun9g02327	753	ProSitePatterns	Protein kinases ATP-binding region signature.	411	433	IPR017441	GO:0005524
	Viun9g02327	753	Pfam	Universal stress protein family	18	151	IPR006016	-
	Viun9g02327	753	Gene3D	Transferase(Phosphotransferase) domain 1	480	694	-	-
	Viun9g02327	753	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	17	154	-	-
	Viun9g02327	753	MobiDBLite	consensus disorder prediction	327	346	-	-
	Viun9g02327	753	ProSiteProfiles	Protein kinase domain profile.	405	680	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun9g02327	753	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	526	538	IPR008271	GO:0004672\|GO:0006468
	Viun9g02327	753	SUPERFAMILY	Protein kinase-like (PK-like)	386	676	IPR011009	-
	Viun9g02327	753	PANTHER	OS08G0249100 PROTEIN	74	684	IPR046958	-
	Viun9g02327	753	FunFam	probable receptor-like serine/threonine-protein kinase At5g57670	374	479	-	-
	Viun9g02327	753	FunFam	Putative receptor-like serine/threonine-protein kinase	480	692	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g02327	Viun-Chr9	32820086	32824088	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g02327	392	669	Trihelix Transcription Factor Family	AT1G68690	44.170	2.07e-72	247

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Viun9g02327		Pkinase	6.7e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g02327	-		-	pcin:129303222	1023.08