Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02319 ATGGATATTGAGGTGACAATTAAAGATTATAATTGTGTTGCTGAAGAGGGACAACATTTGAATAGTGAAGCCATGAATGATGAGGTTGCAATTGCTCATGCTAACGGGGTTGTTGGAGAGGTTAGTGTCCTGAAAAGTGAACCCTTTAGTAATGGGGTGGCAGTTGGAGATAAAGGTGGCTCTGGTGGAGTGGAATGTTTGCGAACTTATAAGAGACGTAAGAAGTCAAGTTCAAGAGGAAAAATTCAGGAACAATGGGTAGCAGGCATGGCAACTGCAAGTGGAATAGCTGATCAGAATGTGAAGAAACCATGTGATCTAGCTTTAGGCAATACTTCAGATGATTGTTCCCAAGGACAGTGGGGAAATATTGTACTAAAGCATTTATATCAGTCATTAGGTGATGGCAATGGTGGTGTGGAGGGGTGCATAAGGGAAGCACTTAATCCTAAACAAAATCATGCCACTACTGTTATGGAAACCTTTATAATTGAAAAAGATGGTAAAAGATGCTCTTCGCAATCTGAGCTGCTTTCTCATAGAACAGGGAAGGAAGCTAATCGACATGCAGATGTCATGTGTAATGGATGTTCCAGTGAATTACCTGACCATGGTGTGACTGAGATGTGTCAACGTGTTCTATCTAATATCTTAACCACAGAAAAATTTCGCTCACTGTGTAAGGCTTTGCTTGAAAATTTCCAGGGAATGAAGCCTGAAAGTGTATTTGACTTTACCATCATGAATTCAAGGATGAAGGAACAAGCTTATGAACAATCACCAGCACTCTTCTTGTCAGATATTCAACAGGTTTGGGGAAAGCTTCAAGACACTGGTAACGAGATTGTTGCTCTTGCCAAGAGCCTATCCAGCATTTCAACAACTTCCTACTCAGAGCTGGTAGGAGTTTCAGCACCGAGCACATTTCGAGAGAAGCAGCCGTCCTGCAACGGAGAATTGGGCTTTCACGTGAAGCCAGAACAGACGCAAGACTGTGCTATGCACAGAATCGGCAGTTGCAGCCGTTGTGGAGAGACGGCAGATGATAAAGACTGTTTGGTTTGTGATTCATGTGAGGAGATATACCATGTGTCCTGTATTGAGCCGTCAGTGAAAGAAATAATACCCCACAAAAGCTGGTATTGTGCCAAGTGTACTGCTAAAGGGATTGGATCTCCACATGAACATTGTGTACTATGTGAAAGGTTAAATGATGAACAGACCCCAAATGGCATAATTGGTGATGAAAGCTTTCCTACCATTAAGGAAACAAAAAATGAATTTGAAGAAAATTCAAATTGCACCTCTGATGGGATTGAAGGTTCTATAGGTGAGAAAACAACACCCATTTGCAAAATTTGCAGAAATGAAGTGGATGGTAATAAGAGAAAAAAGGTAAAAGTATGTGGCCATAGGTTTTGCCCCAACAAGTACTACCATGTAAGGTGTTTAACAAAGAAGCAGTTAAAGTCATACGGTCACTGTTGGTACTGCCCTTCTTGTATATGCTGTGTTTGCTTAATTGATCGAGATGATGATCAGATCGTTATCTGTGATGGCTGTGATCGTGGCTATCACCTCTATTGCTTGACACCTCCACAGTCTTCTATTCCAAGCGGGAAATGGTTCTGCAGACTCTGTGATGCTGGGATACAAGCAATTCACAAGGCTAAAAAGGCTTATGAAAGTAACGAGCCAAGCAGAAAAGGGAGAGATGCTGCTAAGCCAAAAGCTAAGCTTGATAAGAAACACAGAAATAAACGAGCAAGAGAATTGGAAAGAGGTGGTGCAATGGACATGCTATTAACAGCAGCCAATACTCTGAATTTTGAAGAGAAAGAGGCAGCAATCCAAATTGAGTCGCAGACAACATGA 1875 0.416 MDIEVTIKDYNCVAEEGQHLNSEAMNDEVAIAHANGVVGEVSVLKSEPFSNGVAVGDKGGSGGVECLRTYKRRKKSSSRGKIQEQWVAGMATASGIADQNVKKPCDLALGNTSDDCSQGQWGNIVLKHLYQSLGDGNGGVEGCIREALNPKQNHATTVMETFIIEKDGKRCSSQSELLSHRTGKEANRHADVMCNGCSSELPDHGVTEMCQRVLSNILTTEKFRSLCKALLENFQGMKPESVFDFTIMNSRMKEQAYEQSPALFLSDIQQVWGKLQDTGNEIVALAKSLSSISTTSYSELVGVSAPSTFREKQPSCNGELGFHVKPEQTQDCAMHRIGSCSRCGETADDKDCLVCDSCEEIYHVSCIEPSVKEIIPHKSWYCAKCTAKGIGSPHEHCVLCERLNDEQTPNGIIGDESFPTIKETKNEFEENSNCTSDGIEGSIGEKTTPICKICRNEVDGNKRKKVKVCGHRFCPNKYYHVRCLTKKQLKSYGHCWYCPSCICCVCLIDRDDDQIVICDGCDRGYHLYCLTPPQSSIPSGKWFCRLCDAGIQAIHKAKKAYESNEPSRKGRDAAKPKAKLDKKHRNKRARELERGGAMDMLLTAANTLNFEEKEAAIQIESQTT 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02319 624 SUPERFAMILY FYVE/PHD zinc finger 330 389 IPR011011 -
Viun9g02319 624 MobiDBLite consensus disorder prediction 562 590 - -
Viun9g02319 624 ProSiteProfiles Zinc finger RING-type profile. 451 501 IPR001841 -
Viun9g02319 624 Gene3D - 226 388 - -
Viun9g02319 624 FunFam PHD finger protein EHD3 isoform A 228 389 - -
Viun9g02319 624 ProSiteProfiles Zinc finger PHD-type profile. 500 550 IPR019787 -
Viun9g02319 624 Pfam PHD-finger 502 548 IPR019787 -
Viun9g02319 624 Pfam PHD-finger 340 387 IPR019787 -
Viun9g02319 624 SMART PHD_3 503 548 IPR001965 -
Viun9g02319 624 SMART PHD_3 450 502 IPR001965 -
Viun9g02319 624 SMART PHD_3 339 386 IPR001965 -
Viun9g02319 624 MobiDBLite consensus disorder prediction 562 579 - -
Viun9g02319 624 ProSitePatterns Zinc finger PHD-type signature. 340 385 IPR019786 -
Viun9g02319 624 ProSiteProfiles Zinc finger PHD-type profile. 337 388 IPR019787 -
Viun9g02319 624 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 442 553 IPR013083 -
Viun9g02319 624 PANTHER OS02G0192300 PROTEIN 255 388 - -
Viun9g02319 624 SUPERFAMILY FYVE/PHD zinc finger 502 550 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02319 Viun-Chr9 32772940 32781899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02319 502 571 C2H2 Transcription Factor Family AT3G01460 45.833 7.12e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun9g02319 PHD 4.5e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02319 - - gmx:100795906 923.309