Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02313 ATGGGTGTCCATTTAAATCAGCTGCTACTCGTTGTGCTCCTGACTGCTGCAGCAGCAGCTAAAACTCAACCTATGTCAAAGCCAAACTGTCCAACAAAGTGTGGCAATGTTAGCATTCCATTTCCCTTTGGTCTGACTGAGCTCTGTTCTCTCAACACCTCATTTCTCATCACTTGCAACAAAACCCTTTCACAACCAATTCCATTCTTGAAAATTGATCCAAGGGTGCGGCTGCTGGACATCTCACTCGACGGCCAACTGCACGTTTCATTGCCAGTTGTTACAAGTTGCGTCGATAACAAGACTGGTGAATCAGGCGGCTATTTCTACTTCCGCTTCAACCTCAAACCTTTTCACCTATCATCCAAGCAAAACAAGTTAACTGTATTGGGCGCTATCACGGCAGGAGCAGTACATGATGAAGATTCAACAGCATACGCTCCCACTTATTGCGTCTCCATGTACAGCAACATTCACAACATACATTACGACTCATGCTCCGGCACTTTTTGTTGCCAGACTCCAATTCAACATAGGCTATCGGAATTCGTCTACGTTTGTGGTTCAAATATTATGCAAGATAACTACACCAAGCCGTTTGAGTCCTACCCATGTGGTTATACATTTCTGGTTAAGGACGGAGCCTACGATTTCTCAATCACAGATCTGATCAATTTTAACAGAAGCAACACGTTTCCTGTGGTTGTGGATTGGGCAGTGGGGAACACGTGCCAAGCTGCTCAGAAGAATGCTTCAAGCTATGAGTGTAAGTCAAAGTACAGTGAATGTCACAATGCAAAGGTGGGACCTGGTTACCATTGTAAATGCTCCGCTGGTTTTCGAGGAAATCCTTACCTACCAGATGGCTGTCAAGATGTTGATGAATGCGCTGAGGAATCCCACGACTGTATAAAGGGGAGATCAACATGCAGCAACAGTCAAGAAGGGAGCTACAGTTGTTTTTGTCCAAAGGGGTATGAAGGAGATGGGAAAAATAATGGAAACGGATGTGTTATCAGCAGTAACCGCAAAATCATAATAGGTTTCAGTGTGAGTGGAAGTATCTTGGCACTGCTGGGGGGAACCTTATACGTGTACTGCACATTAAAGAAAAGAAAACTCAACAAAGTTAAAGAACATTTTTTTCAACTAAACGGTGGTCTGTTATTACAGCAACAGATAGGCAGGTACAGTGGATCAAATGAATTGACAAAAATCTTTACTGTGGAAGAACTAAAAGAGGCCACCAACAATTTCAATGAAGAGATGGTCTTAGGCGAAGGCGGGCAGGGAACAGTTTACAAAGGAATATTACCTGATAATAGAACTGTAGCAATAAAAAAGTCGAGAATTAGTGACCCAAACCAAATTGAGCATTTCATCAATGAGGTGATTCTGCTTTGTCAAATCAACCATAGAAATGTGGTGAAACTCTTGGGGTGTTGTTTAGAGACAGAGGTTCCCTTACTTGTTTATGAATTCGTTCCCAATGGAACTGTTTACGACCATCTCCACGATCAAACCAAATCTTTAAGACTTACATGGAAAAGAAGATTACAAATAGCAGTTGAAACTTCTGGGGCCCTGGCATACTTGCATTCTGCTACCAATGCACCAATCGTACACAGAGATGTGAAAACTTCAAACATACTACTTGATCACAATCTCACTGCAAAGATTTCTGATTTTGGAGCTTCAAAGATTATTCCTCTTGATCGAACACAGTTAACGACTTTGGTGATGGGGACACTGGGATATCTTGACCCACAATACTTCCACTCAAGCCAGTTAACAGAGAAAAGTGATGTGTATAGTTTTGGAGTTGTCCTAGTCGAACTGCTGACAGGAGAGAAAGCAATCTCTTTTGAAAGGCCAGAGGCTTATAGAAATCTTGCGGTTCACTTCCTTTCTTCAATGAATGATGGTCGGTTACTTGACATTATGGATGGCAGCATAATAGATGAGGCAAATGTTGAGCAACTAACGGATGTTGCAAACATAGCAAGGCATTGTTTAAGGTTGAAGGGGGAGGAAAGGCCCACCATGAGAGAAGTGGCAATGGAACTTGAAGGAATAAACACTGTGGAGAAGCACCAATGGGAAAAGGTAAACTTGTCATCAGAGGAGACTGAAACTCTTCTCAAAGCAACACCGTCATCTTCTTTTAGTGTAGATGGTGTTAACAGAAGAAGCATGCATTCTGGCTCTGATACTTTGAACCGAATTTCCTTGTCCTTAACTAGTGGAAGGTGA 2253 0.4234 MGVHLNQLLLVVLLTAAAAAKTQPMSKPNCPTKCGNVSIPFPFGLTELCSLNTSFLITCNKTLSQPIPFLKIDPRVRLLDISLDGQLHVSLPVVTSCVDNKTGESGGYFYFRFNLKPFHLSSKQNKLTVLGAITAGAVHDEDSTAYAPTYCVSMYSNIHNIHYDSCSGTFCCQTPIQHRLSEFVYVCGSNIMQDNYTKPFESYPCGYTFLVKDGAYDFSITDLINFNRSNTFPVVVDWAVGNTCQAAQKNASSYECKSKYSECHNAKVGPGYHCKCSAGFRGNPYLPDGCQDVDECAEESHDCIKGRSTCSNSQEGSYSCFCPKGYEGDGKNNGNGCVISSNRKIIIGFSVSGSILALLGGTLYVYCTLKKRKLNKVKEHFFQLNGGLLLQQQIGRYSGSNELTKIFTVEELKEATNNFNEEMVLGEGGQGTVYKGILPDNRTVAIKKSRISDPNQIEHFINEVILLCQINHRNVVKLLGCCLETEVPLLVYEFVPNGTVYDHLHDQTKSLRLTWKRRLQIAVETSGALAYLHSATNAPIVHRDVKTSNILLDHNLTAKISDFGASKIIPLDRTQLTTLVMGTLGYLDPQYFHSSQLTEKSDVYSFGVVLVELLTGEKAISFERPEAYRNLAVHFLSSMNDGRLLDIMDGSIIDEANVEQLTDVANIARHCLRLKGEERPTMREVAMELEGINTVEKHQWEKVNLSSEETETLLKATPSSSFSVDGVNRRSMHSGSDTLNRISLSLTSGR 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02313 750 SUPERFAMILY EGF/Laminin 290 337 - -
Viun9g02313 750 FunFam Wall-associated receptor kinase 2 389 494 - -
Viun9g02313 750 FunFam Wall-associated receptor kinase 2 495 712 - -
Viun9g02313 750 Pfam Wall-associated receptor kinase galacturonan-binding 30 86 IPR025287 GO:0030247
Viun9g02313 750 SMART egfca_6 292 338 IPR001881 GO:0005509
Viun9g02313 750 Gene3D Laminin 294 333 - -
Viun9g02313 750 SUPERFAMILY Protein kinase-like (PK-like) 401 690 IPR011009 -
Viun9g02313 750 SMART egf_5 295 338 IPR000742 -
Viun9g02313 750 SMART egf_5 255 291 IPR000742 -
Viun9g02313 750 Pfam Calcium-binding EGF domain 292 332 IPR001881 GO:0005509
Viun9g02313 750 FunFam Fibrillin 2 287 333 - -
Viun9g02313 750 ProSiteProfiles Protein kinase domain profile. 419 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02313 750 Pfam Protein kinase domain 420 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02313 750 ProSiteProfiles EGF-like domain profile. 292 332 IPR000742 -
Viun9g02313 750 CDD STKc_IRAK 425 692 - -
Viun9g02313 750 Gene3D Transferase(Phosphotransferase) domain 1 495 715 - -
Viun9g02313 750 Gene3D Phosphorylase Kinase; domain 1 389 494 - -
Viun9g02313 750 SMART serkin_6 419 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02313 750 Gene3D Laminin 241 293 - -
Viun9g02313 750 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 695 IPR045274 GO:0007166
Viun9g02313 750 CDD EGF_CA 292 329 - -
Viun9g02313 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02313 Viun-Chr9 32600493 32607130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02313 1 700 Receptor kinase-like Gene Family AT1G21230 42.857 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun9g02313 Pkinase 9.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02313 - - vum:124835050 1178.31