Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02312 ATGGCAGACCTCGTCAATTTTTACAGCAGCAACAACACGTTTCCTGTGGTTATGGATTGGACAGTGGGGAACACGTGCCTAGATGCTCAGAATAATGCTTCAAGTTATGCGTGCAAGGCAAAGTACAGTGAATGTCGCAATGCAGAGGTGGGATCTGGTTACCACTGTCAATGCTCCACTGGTTTTCGGGGAAACCCTTACCTACCTCATGGTTGTCAAGATGTTGATGAATGCACTGAGGCATCTCACGACTGTTTAAAGGGTAGATCAATATGCAGCAACACAATAGGGAGCTACAGTTGTTCTTGTCCAAAGGGATATGAAGGAGACGGAAAAATTAGTGGAAGCGGATGTGTGATCAGCAGTAACCGCAAATTCATAATTTCTTTCGGTGTGAGTGGAAGTATATTGGCACTGCGGGGAACCTTATATCTGTGTTGTACATTAAAGAAAAGAAAACTCAACAAACTTAAAGAACACTTTTTTCAACTAAACGGTGGCCTATTGTTACAGCAACAGATAAGCAGGTTTTGTGGATCAAATGAATTGACGAAAGTCTTTACTGTGGAAGAACTAAAAGAGGCCACCAACAATTTCAGTGAAGAGATGGTCTTAGGCGCAGGTGGGGAGGGAACAGTTTGCAAAGGAATATTACCTGATAATAGAACTGTAGCAATTAAAAAGTCGAGAATTAGTAACCCAAACCAAATTGAGCATTTCATCAATGAGGTGATTCTGCTTTGTCAAATTAACCATAGAAATGTGGTGAAACTCTTGGGATGTTGTTTAGAGACAGAGGTTCCCTTACTTGTTTATGAATTCGTTCCCAATGGAACTGTTTACGAACATCTCCACGATCAAACAAAATCTTTAAGACTTACATGGAAAAGAAGATTACAAATAGCAGTTGAAACTGGTGGGGCCCTGGCTTACTTGCATTCTGCTACCCATGCACCAATCGTACATAGAGATGTGAAAACTTCAAACATACTACTTGATCACAATCTGACTGCAAAGGTTTCTGATTTTGGAGCTTCAAAGATTATTCCTCTTGATCGAACACAGTTAACGACTTTGGTGATGGGGACACTGGGATATCTTGACCCACAATACTTCCACTCAAGCCAGTTAACAGATGATGTGTATAGTTTTGGAGTTGTCCTAGTCGAACTGCTAACAGGAGAGAAGGCACTCTCTTTTGAAAGGCCAGAGGCCCATAGAAACCTAGCGATTCACTTCCTTTCTTCAATGAATGAGGGTCGGTTACTTAGCATTGTCGATTGCCGCATAATAGATGAGGCAAATGTTGAGCAACTAATGGGTGTTGCAAATATTGCAAGGCATTGTTTAAGGTTGAAGGGGGAGGAAAGACCCACCATGAGAGAAGTGGCCATGGAACTTGAAGAAATCAACATTGTGGAGAAGCACCAATGGGAAACAATCAACTTGTCATCAGAGGAGACTGAAACTCTTCTCAAAGCAACACCATCATCTTCTTTTAGGGTAGATGGTGTTAACAGAGGAAGCATGCATTCTGGCTCTGATATTTTAAACCGAATTTCTTTTTCCTTAACTAGTGGAAGATGA 1587 0.414 MADLVNFYSSNNTFPVVMDWTVGNTCLDAQNNASSYACKAKYSECRNAEVGSGYHCQCSTGFRGNPYLPHGCQDVDECTEASHDCLKGRSICSNTIGSYSCSCPKGYEGDGKISGSGCVISSNRKFIISFGVSGSILALLXGTLYLCCTLKKRKLNKLKEHFFQLNGGLLLQQQISRFCGSNELTKVFTVEELKEATNNFSEEMVLGAGGEGTVCKGILPDNRTVAIKKSRISNPNQIEHFINEVILLCQINHRNVVKLLGCCLETEVPLLVYEFVPNGTVYEHLHDQTKSLRLTWKRRLQIAVETGGALAYLHSATHAPIVHRDVKTSNILLDHNLTAKVSDFGASKIIPLDRTQLTTLVMGTLGYLDPQYFHSSQLTEXDVYSFGVVLVELLTGEKALSFERPEAHRNLAIHFLSSMNEGRLLSIVDCRIIDEANVEQLMGVANIARHCLRLKGEERPTMREVAMELEEINIVEKHQWETINLSSEETETLLKATPSSSFRVDGVNRGSMHSGSDILNRISFSLTSGR 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02312 530 SMART egf_5 25 73 IPR000742 -
Viun9g02312 530 SMART egf_5 77 119 IPR000742 -
Viun9g02312 530 Pfam Calcium-binding EGF domain 74 110 IPR001881 GO:0005509
Viun9g02312 530 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Viun9g02312 530 SUPERFAMILY Protein kinase-like (PK-like) 183 472 IPR011009 -
Viun9g02312 530 SUPERFAMILY EGF/Laminin 70 109 - -
Viun9g02312 530 ProSiteProfiles EGF-like domain profile. 74 110 IPR000742 -
Viun9g02312 530 FunFam Fibrillin 2 69 114 - -
Viun9g02312 530 CDD EGF_CA 74 110 - -
Viun9g02312 530 SMART egfca_6 74 119 IPR001881 GO:0005509
Viun9g02312 530 Gene3D Laminin 23 75 - -
Viun9g02312 530 Pfam Protein kinase domain 201 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02312 530 Gene3D Laminin 76 113 - -
Viun9g02312 530 Gene3D Phosphorylase Kinase; domain 1 176 275 - -
Viun9g02312 530 ProSiteProfiles Protein kinase domain profile. 200 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02312 530 ProSitePatterns Calcium-binding EGF-like domain signature. 74 101 IPR018097 GO:0005509
Viun9g02312 530 SMART serkin_6 200 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02312 530 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 12 476 IPR045274 GO:0007166
Viun9g02312 530 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 92 103 IPR000152 -
Viun9g02312 530 FunFam Wall-associated receptor kinase 2 276 492 - -
Viun9g02312 530 FunFam Wall-associated receptor kinase 2 170 275 - -
Viun9g02312 530 Gene3D Transferase(Phosphotransferase) domain 1 276 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02312 Viun-Chr9 32593436 32596780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02312 14 494 Receptor kinase-like Gene Family AT1G21230 50.000 3.86e-162 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun9g02312 Pkinase 1.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02312 - - vum:124835050 856.284