Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02311 ATGGGCTTCCATTTAAATCAGCGGCTACTTCTTGTAATCCTCACTGCAGCTGCAGCAGCAGCAGCAGAAGAGCAAAAATGCCCAACAAAGTGTGGCAATGTTAACATTCCATTTCCCTTTGGTCTGACTGAGCTCTGTTCTCTCAACACCTCATTTATCATCACTTGCAACAAAACCCTTTCACAACCAATTCCATTCTTGAAAATTGATCCAAAGGTGCGGGTGCTGGACATCTCACTCGACGGCCAACTTCACGTTTCATTGCCAGTTGCCACAAGTTGCGTCAATAACACGATTGGTGAATCAGAGGATGAAAATTGGCTCTTCGAGTTCAAGCTCAAACCTTTTCACCTATCATCCAAGCAAAACAAGTTAACTGTATTGGGTGGTGACGCGGCGGGAGTAGTATATGATCAAGGTTCAAGATCCGGAAGACTATACATTACTACTGCGTGCGTGTCTGTGTACAGTGGCCTTGACAAGGAACCAACGAATGACGAGTCATGCTCCGGCACTTTTTGTTGCGAGACTCCAATTCAACAAAGGCTATCGGAATTTTATATTTATTCTGCAAATATAATCATAAATAACTTCACCAAGTCATTTCAGTCCTACCCATGTGGTTATACATTTCTGGTTAAGGATGGAGCCTACAATTTCTCAATGACACACCTCATCAATTTTAACAGAACCAACACGTTTCCTGTGGTTTTGGATTGGGCAGTGGGGAACACGTGCATAGATGCTCAGAAGAATGCTTCAAGCTATGCGTGTAAGTCAAAGTACAGTGAATGTCACAATGCAATCGTGGGACCTGGTTACCATTGTAAATGCTCCACTGGTTTTCAAGGAAATCCTTACCTACCACATGGCTGTCAAGATGTTGATGAATGCACTGAGGAATCTGACGACTGTTTAAAGGGTAGATCAACATGCAGCAACGATCCAGAAGGGAGCTACACTTGTTTATGTCCAAAGGGATATGAAGGAGATGGGAAAATTAATGGAAGTGGATGTGTTATCAGGAGTAACCGCAAAATCATAATCGCTTTCAGTGTGAGTGGAAGTATATTGGCACTGCTGGGGGGAACCTTATTCGTCTGCTGTACATTAAAGAAAAGAAAACTCAACAGACTTAAAGAACATTTTTTCCAACTAAACGGTGGCCAGTTATTACAGCAACAGATAGGCAGGTATAGTGGATCAAATGAATTGACAAAAATCTTTACTGTGGAAGAACTAAAAGATGCCACCCACAATTTCAGTGAAGAGATGGTCTTAGGCGCAGGTGGGGAGGGAACAGTTTACAAAGGAATATTACCTGACAATAGAACTGTAGCAATTAAAAAGTCGAGAATTAGTAACCCAAACCAAATTGAGCATTTCATCAATGAGGTGATTCTGCTTTGTCAAATCAACCATAGAAATGTGGTGAAACTCTTGGGGTGTTGTTTAGAGACAGAGGTTCCCTTACTTGTTTATGAATTCGTTCCCCATGGAACTGTTTACGACCATCTCCACGATCAAACCAAATCTTTAAGACTTACATGGAAAAGAAGATTACAAATAGCAGTTGAAACTTCTGGGGCCCTGGCATACTTGCATTCTGCTACCAATGCACCAATCGTACACAGAGATGTGAAAACTTCAAACATACTACTTGATCACAATCTCACTGCAAAGGTTTCTGATTTTGGAGCTTCAAAGATTATTCCTCTTGATCGAAGTCAGTTAACGACTTTGGTGATGGGGACACTGGGATATCTTGACCCACAATACTTCCACTCAAGCCAGTTAACAGAGAAAAGTGATGTTTATAGTTTTGGAGTTGTCCTAGTCGAACTGCTAACCGGAGAGAAGGCACTCTCCTTTGAAAGGCCGGAGGCTCATAGAAATCTAGCGGTTCACTTCCATTCTTCAATGAACGAGGGTGGGTTACTAAACATTGTCGATAGCCGCATAATAGATGAGGCAAATGTTGAGCAACTAACGGATGTTGCAAATATAGCAAGGCATTGTTTAAGGTTGAAGGGGGAGGAAAGGCCCACCATGAGAGAAGTGGCAATGGAACTTGAAGGAATAAACACTGTGGAGAAGCACCAATGGGAAAAGGTAAACTTGTCATCAGAGGAGACTGAAACTCTTCTCAAAGCAACACCGTCATCTTCTTTTAGTGTAGATGGTGTTAACAGAAGAAGCATGCATTCTGGCTCTGATACTTTAAACCGAATAATTTCCTTGTCCTTAACTAGTGGAAGATGA 2262 0.4191 MGFHLNQRLLLVILTAAAAAAAEEQKCPTKCGNVNIPFPFGLTELCSLNTSFIITCNKTLSQPIPFLKIDPKVRVLDISLDGQLHVSLPVATSCVNNTIGESEDENWLFEFKLKPFHLSSKQNKLTVLGGDAAGVVYDQGSRSGRLYITTACVSVYSGLDKEPTNDESCSGTFCCETPIQQRLSEFYIYSANIIINNFTKSFQSYPCGYTFLVKDGAYNFSMTHLINFNRTNTFPVVLDWAVGNTCIDAQKNASSYACKSKYSECHNAIVGPGYHCKCSTGFQGNPYLPHGCQDVDECTEESDDCLKGRSTCSNDPEGSYTCLCPKGYEGDGKINGSGCVIRSNRKIIIAFSVSGSILALLGGTLFVCCTLKKRKLNRLKEHFFQLNGGQLLQQQIGRYSGSNELTKIFTVEELKDATHNFSEEMVLGAGGEGTVYKGILPDNRTVAIKKSRISNPNQIEHFINEVILLCQINHRNVVKLLGCCLETEVPLLVYEFVPHGTVYDHLHDQTKSLRLTWKRRLQIAVETSGALAYLHSATNAPIVHRDVKTSNILLDHNLTAKVSDFGASKIIPLDRSQLTTLVMGTLGYLDPQYFHSSQLTEKSDVYSFGVVLVELLTGEKALSFERPEAHRNLAVHFHSSMNEGGLLNIVDSRIIDEANVEQLTDVANIARHCLRLKGEERPTMREVAMELEGINTVEKHQWEKVNLSSEETETLLKATPSSSFSVDGVNRRSMHSGSDTLNRIISLSLTSGR 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02311 753 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 16 697 IPR045274 GO:0007166
Viun9g02311 753 SMART egfca_6 294 340 IPR001881 GO:0005509
Viun9g02311 753 Gene3D Laminin 243 295 - -
Viun9g02311 753 SMART serkin_6 421 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02311 753 ProSiteProfiles EGF-like domain profile. 294 331 IPR000742 -
Viun9g02311 753 Pfam Calcium-binding EGF domain 294 332 IPR001881 GO:0005509
Viun9g02311 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672|GO:0006468
Viun9g02311 753 FunFam Wall-associated receptor kinase 2 391 496 - -
Viun9g02311 753 Pfam Protein kinase domain 422 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02311 753 SUPERFAMILY EGF/Laminin 292 332 - -
Viun9g02311 753 FunFam Wall-associated receptor kinase 2 497 714 - -
Viun9g02311 753 SUPERFAMILY Protein kinase-like (PK-like) 403 692 IPR011009 -
Viun9g02311 753 Gene3D Transferase(Phosphotransferase) domain 1 497 717 - -
Viun9g02311 753 SMART egf_5 257 293 IPR000742 -
Viun9g02311 753 SMART egf_5 297 340 IPR000742 -
Viun9g02311 753 CDD EGF_CA 294 331 - -
Viun9g02311 753 ProSiteProfiles Protein kinase domain profile. 421 703 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02311 753 Gene3D Phosphorylase Kinase; domain 1 397 496 - -
Viun9g02311 753 Pfam Wall-associated receptor kinase galacturonan-binding 27 84 IPR025287 GO:0030247
Viun9g02311 753 CDD STKc_IRAK 427 694 - -
Viun9g02311 753 Gene3D Laminin 296 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02311 Viun-Chr9 32584393 32587802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02311 21 753 Receptor kinase-like Gene Family AT1G21230 41.935 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun9g02311 Pkinase 3.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02311 - - vum:124835050 1142.1