Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02310 ATGAAGTTGAAAGAAAAACAGGTGCAGATGGGGTTGTATTTGAAGCAGCGGCTACTTCTTGTGCTCCTCACTGCAGCAGTAGCAGCATCAGCTAAAACCCAACCTATATCAAAGCCAAAGTGTCCAACAAAGTGCGGCAATGTTAGCATTCCCTTTCCCTTTGGCCTCACTAAGCACTGTTCTCTCAACACCTCATTTCTCATCACTTGCAACCAAACCCTTTCACCACCCACTCCATTCTTGAACACTACTTATGAAAACGTGCGGGTGCTGAACATCTCACTCGACGGCCAACTGCATGTTTCATTGCCAGTTGCTAAAAGTTGCGTCGTCGATAACAAGACTGGTGAATCATACAACGAGGTTATTTTCATCATGTTCGACAGACCTTTTCACCTATCATCCAACCAAAACAAGTTAACTGTATTGGGCGCTGACACGGCAGGAGTAGTATATGATCAAGATTCAAGATCCAAAACACGTTACGCTCCCACTTCTTGCGTGTCCTTGAACACCACAATTTACAACAACACACATGATGACTCATGCTCCGGCACTTTTTGTTGCGAGACTCCAATTCAACATAGGCTATCGGAATTCGCCTATATTTCTGCTTCAAATATCTTCGACGATAACTACACCAAGCCATGTGGTTATGCATTTCTGGTTAAGGAGGGAGCTTACGATTTCTCAATCACAGATCTGATCAATTTTAACAGAAGCAACACGTTTCCTGTGGTTGTGGATTGGGCAGTGGGGAACACGTGCATAGATGCTCAGAAGAATGCTTCAAGCTATGCGTGTAAGTCAAAGTACAGTGAATGTCACAATGCAATCGTGGGACCTGGTTACCATTGTAAATGCTCCATTGGTTTTCGAGGAAATCCTTACCTACCACATGGCTGTCAAGATGTTGATGAATGCACTGAGGAATCCCACGACTGTTTAAAGGGGAGATCAATATGCATCAACAGTCCAGCAGGGAGCTATAGTTGTTCTTGTCTAAAGGGATATGAAGGAGATGGGAAGATCAATGGAAGCGGATGTGTTAGCAGGAGTAACCGCAAAATAATAATTGCTCTCAGTGTGAGTGGAAGTATATTGGCACTGGTGGGGGGAACCTTATACCTGTGTTGTACATTAAAGAAAAGAAAACTCAACAAACTTAAAGAACATTTTTTCCAACTAAACGGTGGCATGTTATTACAGCAACAGATAGGCAGGCACAGTGATTCAAATGAATTGACAAAAATCTTCACTGTGGAAGAACTAAAAGAGGCCACCAACAATTTCAATGAAGAGATGGTCTTAGGCGAAGGTGGGGAGGGAACAGTTTACAAAGGAATATTACCTGATAATAGAACTGTAGCAATAAAAAAGTCGAGAATCAGTAACCCAAACCAAATTGAGCATTTCATCAATGAGGTGATTCTGCTTTGTCAAATCAACCATAGAAATGTGGTGAAACTCTTGGGGTGTTGTTTAGAGACAGAGGTTCCCTTACTTGTTTATGAATTCGTTCCCAATGGAACTGTTTACGACCATCTCCACGATCAAACCAAATCTTTAAGACTTACATGGAAAAGAAGATTACAAATAGCAGTAGAAACTGGTGGGGCCCTGGCTTACTTGCATTCTGCTACCCATGCACCAATCATACATAGAGATGTGAAAACTTCAAACATACTACTTGATCACAATCTCACTGCAAAGGTATCTGATTTCGGAGCTTCAAAGATTATTCCTCTTGATCGAAGTCAGTTAACGACTTTGGTGATGGGGACACTGGGATATCTTGACCCACAATACTTCCACTCAAGCCAGTTAACAGAGAAAAGTGATGTGTATAGTTTTGGAGTTGTCCTAGTCGAACTGTTAACAGGAGAGAAGGCACTCTGTTTTGAAAGGCCAGAGGCTTATAGAAACCTTGCGGTTCACTTCCTTTCTTCGATGAATGAGGGTCGGCTACTTGACATTGTCGATAGCCGCATAATGGATGAGGCAAATGTTGAGCAACTAATGGATGTTGCCAATATTGCAAGCCATTGTTTAAGGTTGAAGGGAGAGGAAAGGCCCACCATGAGAGAAGTGGCAATGGGACTTGAAGAAATAAACATTGTGGAGAAGCACCAATGGGAAAAAGTCAACTTGTCATCAGAGGAGACTGAAAATGTCAACTTGTCATCATCCTCTTTTAGTGTAGATGGTGTCAGCAGAAGAAGCATGCATTCTAGCTCTGATATCTTAAATAGAATTTCCTTGTCCTTGACTAGTGGAAGATGA 2283 0.4214 MKLKEKQVQMGLYLKQRLLLVLLTAAVAASAKTQPISKPKCPTKCGNVSIPFPFGLTKHCSLNTSFLITCNQTLSPPTPFLNTTYENVRVLNISLDGQLHVSLPVAKSCVVDNKTGESYNEVIFIMFDRPFHLSSNQNKLTVLGADTAGVVYDQDSRSKTRYAPTSCVSLNTTIYNNTHDDSCSGTFCCETPIQHRLSEFAYISASNIFDDNYTKPCGYAFLVKEGAYDFSITDLINFNRSNTFPVVVDWAVGNTCIDAQKNASSYACKSKYSECHNAIVGPGYHCKCSIGFRGNPYLPHGCQDVDECTEESHDCLKGRSICINSPAGSYSCSCLKGYEGDGKINGSGCVSRSNRKIIIALSVSGSILALVGGTLYLCCTLKKRKLNKLKEHFFQLNGGMLLQQQIGRHSDSNELTKIFTVEELKEATNNFNEEMVLGEGGEGTVYKGILPDNRTVAIKKSRISNPNQIEHFINEVILLCQINHRNVVKLLGCCLETEVPLLVYEFVPNGTVYDHLHDQTKSLRLTWKRRLQIAVETGGALAYLHSATHAPIIHRDVKTSNILLDHNLTAKVSDFGASKIIPLDRSQLTTLVMGTLGYLDPQYFHSSQLTEKSDVYSFGVVLVELLTGEKALCFERPEAYRNLAVHFLSSMNEGRLLDIVDSRIMDEANVEQLMDVANIASHCLRLKGEERPTMREVAMGLEEINIVEKHQWEKVNLSSEETENVNLSSSSFSVDGVSRRSMHSSSDILNRISLSLTSGR 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02310 760 Gene3D Transferase(Phosphotransferase) domain 1 507 727 - -
Viun9g02310 760 SMART egfca_6 304 350 IPR001881 GO:0005509
Viun9g02310 760 SUPERFAMILY Protein kinase-like (PK-like) 414 707 IPR011009 -
Viun9g02310 760 FunFam Wall-associated receptor kinase 2 401 506 - -
Viun9g02310 760 ProSiteProfiles EGF-like domain profile. 304 341 IPR000742 -
Viun9g02310 760 SMART serkin_6 431 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02310 760 ProSiteProfiles Protein kinase domain profile. 431 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02310 760 Pfam Calcium-binding EGF domain 304 342 IPR001881 GO:0005509
Viun9g02310 760 SUPERFAMILY EGF/Laminin 302 342 - -
Viun9g02310 760 Gene3D Phosphorylase Kinase; domain 1 405 506 - -
Viun9g02310 760 Pfam Wall-associated receptor kinase galacturonan-binding 41 99 IPR025287 GO:0030247
Viun9g02310 760 Pfam Protein kinase domain 432 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02310 760 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 710 IPR045274 GO:0007166
Viun9g02310 760 CDD EGF_CA 304 341 - -
Viun9g02310 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Viun9g02310 760 FunFam Wall-associated receptor kinase 2 507 724 - -
Viun9g02310 760 CDD STKc_IRAK 437 704 - -
Viun9g02310 760 FunFam Fibrillin 2 299 345 - -
Viun9g02310 760 SMART egf_5 307 350 IPR000742 -
Viun9g02310 760 SMART egf_5 267 303 IPR000742 -
Viun9g02310 760 Gene3D Laminin 254 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02310 Viun-Chr9 32565886 32569749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02310 18 712 Receptor kinase-like Gene Family AT1G21230 43.497 0.0 559
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun9g02310 Pkinase 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02310 - - vum:124835050 1184.86