Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02309 ATGTGTAGCAGAAATTGTGTGCAGTTTAGCAAAATCATTGGAAGGGGCAATTTAATGCAGATGGGCTTCTATTTAAACCAGATGCTACTTCTGGTGCTCCTGAGTGCAGCAGCAGCTAAAACCCAACCTATTTCAAAGCCAAACTGCCCAACAAAGTGCGGCGATGTTAGCATTCCCTTTCCCTTTGGCCTCACTGAGCACTGTTCTCTCAACACCTCATTTCTCATCACTTGCAACCAAACCCTTTCACCACCCATTCCATTCTTGAACAGTACTCAACAAAGTCTTTCATCACCCTTTAACTTCTTGAATGCTACTTATGAAAAGCTGCGGGTGCTGAACATCTCACTCGACGGCCAACTGAACGTTTCATTGCCGGTTGCTACAAGTTGCGTCAATAACAAGACTGGTGAATCAGACAACCAATTTTTTATCATCACGTTCGACACACCTTTTCACCTATCATCCAAGCAAAACAAGTTAACTGTATTGGGCGCTGACACGGCAGGACTTGTATCTGGTCAAGATTCAACATCCAAAACACCATACGCTCCCACTTCTTGCGTGTCCATCAACACCACAAACCCAATTTACAACTACACACATGACGACTGCTCCGGCAGTTTTTGTTGCGAGACTCCAATTCAACATAGGCTATCGGAATTCGGCTATATTTCTGCTTCAAATATCTTCAACAAAAACTACACCAAGCCATATCAGTCCTACCCATGTGGTTATACATTTCTGGTTAAGGAGGGAGCCTACAATTTCTCCATGACAGACCTCATCAATTTTAACAGAACCAAAACGTTTCCTGTGGTTGTCGATTGGGCAGTGGGGAACACGTGCCGAGCTGCTCAAAAGAATACTTCAAGCTATGCGTGTAAGTCAAAGTACAGTGAATGTCACAATGCAAAGGTGGGACCTGGTTACCATTGTAAATGCTCCTCTGGTTTTCGAGGAAATCCTTACCTACCTCATGGTTGTCAAGATGTTGATGAATGCACTGAGGAATCCCACGACTGTCTAAAGGGGAGATCAAAATGCTGCAACAGTCCAGAAGGGAGCTACACTTGTTTATGTCCAAAGGGATACGAAGGAGATGGGAAGATTAATGGAAGCGGATGTGTTAGAAGGAGTAACCGCAAAATCACAATTGCTTTCAGTGTGAGTGGAAGTATATTGGCACTGCTGGGGGGAACCTTATACGTGTACTGCACATTAAAGAAAAGAAAACTCAACAGACTTAAAGAACATTTTTTCCAACTAAACGGTGGCCAGTTATTACAGCAACAGATAGGCAGGTATAGTGGATCAAATGAATTGACAAAAATCTTTACTGTGGAAGAACTAAAAGATGCCACCAACAATTTCAGTGAAGAGATGGTCTTAGGCGCAGGTGGGGAGGGAACAGTTTACAAAGGAATATTACCTGACAATAGAACTGTAGCAATTAAAAAGTCGAGAATTAGTAACCCAAACCAAATTGAGCATTTCATCAATGAGGTGATTCTGCTTTGTCAAATCAACCATAGAAATGTGGTGAAACTCTTGGGGTGTTGTTTAGAGACAGAGGTTCCCTTACTTGTTTATGAATTCGTTCCCCATGGAACTGTTTACGACCATCTCCACGATCAAACCAAATCTTTAAGACTTACATGGAAAAGAAGATTACAAATAGCAGTTGAAACTTCTGGGGCCCTGGCATACTTGCATTCTGCTACCCATGCACCAATCGTACATAGAGATGTGAAAACTTCAAACATACTACTTGATCACAATCTCACTGCAAAGGTTTCTGATTTTGGAGCTTCAAGGATTATTCCTCTTGACAGAAGTGAGTTAACCACTTTGGTGATGGGAACACTGGGGTATCTTGACCCACAATACTTCCACTCAAGCCAGTTAACAGAGAAAAGTGATGTTTATAGTTTTGGAGTTGTCCTAGTCGAACTAATAACAGGAGAGAAGGCACTCTCTTTTGATAGGGCAGAGGCTCATAGAAACCTAGGGGTTCACTTCCTTTCTTCAATGAATGAGGGTCGGTTACTTGACATTGTGGATGGCCGCATAATAGATGAGGCGAATGTTGAGCAACTAATGGTTGTTGCAAACATAGCAAGCCATTGTTTAAGGATGAAGGGGGAGGAGAGGCCTACCATGAGAGAAGTGGCAATGGAACTTGAAGGAATAAACACTGTGGAGAAGCACCAATGGGAAAAAGTCAACTTGTCATCAGAGGAGACTGAAACTCTTCTCAAAGCACCACCGTCATCTTCTTTTAGTGTAGATGGTGTTAACAGAAGAACCATGCTTGCTGGCTCTGATATTTTAAACCGAATTTCCTTCTCCTTAACTAGTGGAAGATGA 2370 0.4245 MCSRNCVQFSKIIGRGNLMQMGFYLNQMLLLVLLSAAAAKTQPISKPNCPTKCGDVSIPFPFGLTEHCSLNTSFLITCNQTLSPPIPFLNSTQQSLSSPFNFLNATYEKLRVLNISLDGQLNVSLPVATSCVNNKTGESDNQFFIITFDTPFHLSSKQNKLTVLGADTAGLVSGQDSTSKTPYAPTSCVSINTTNPIYNYTHDDCSGSFCCETPIQHRLSEFGYISASNIFNKNYTKPYQSYPCGYTFLVKEGAYNFSMTDLINFNRTKTFPVVVDWAVGNTCRAAQKNTSSYACKSKYSECHNAKVGPGYHCKCSSGFRGNPYLPHGCQDVDECTEESHDCLKGRSKCCNSPEGSYTCLCPKGYEGDGKINGSGCVRRSNRKITIAFSVSGSILALLGGTLYVYCTLKKRKLNRLKEHFFQLNGGQLLQQQIGRYSGSNELTKIFTVEELKDATNNFSEEMVLGAGGEGTVYKGILPDNRTVAIKKSRISNPNQIEHFINEVILLCQINHRNVVKLLGCCLETEVPLLVYEFVPHGTVYDHLHDQTKSLRLTWKRRLQIAVETSGALAYLHSATHAPIVHRDVKTSNILLDHNLTAKVSDFGASRIIPLDRSELTTLVMGTLGYLDPQYFHSSQLTEKSDVYSFGVVLVELITGEKALSFDRAEAHRNLGVHFLSSMNEGRLLDIVDGRIIDEANVEQLMVVANIASHCLRMKGEERPTMREVAMELEGINTVEKHQWEKVNLSSEETETLLKAPPSSSFSVDGVNRRTMLAGSDILNRISFSLTSGR 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02309 789 CDD EGF_CA 331 368 - -
Viun9g02309 789 Pfam Wall-associated receptor kinase galacturonan-binding 49 119 IPR025287 GO:0030247
Viun9g02309 789 Gene3D Transferase(Phosphotransferase) domain 1 534 752 - -
Viun9g02309 789 SMART egfca_6 331 377 IPR001881 GO:0005509
Viun9g02309 789 CDD STKc_IRAK 464 731 - -
Viun9g02309 789 SMART egf_5 294 330 IPR000742 -
Viun9g02309 789 SMART egf_5 334 377 IPR000742 -
Viun9g02309 789 FunFam Fibrillin 2 326 372 - -
Viun9g02309 789 ProSitePatterns Serine/Threonine protein kinases active-site signature. 579 591 IPR008271 GO:0004672|GO:0006468
Viun9g02309 789 Pfam Protein tyrosine and serine/threonine kinase 462 728 IPR001245 GO:0004672|GO:0006468
Viun9g02309 789 SUPERFAMILY Protein kinase-like (PK-like) 442 739 IPR011009 -
Viun9g02309 789 Gene3D Phosphorylase Kinase; domain 1 426 533 - -
Viun9g02309 789 Gene3D Laminin 280 332 - -
Viun9g02309 789 FunFam Wall-associated receptor kinase 2 534 751 - -
Viun9g02309 789 SUPERFAMILY EGF/Laminin 329 369 - -
Viun9g02309 789 Gene3D Laminin 333 371 - -
Viun9g02309 789 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 37 734 IPR045274 GO:0007166
Viun9g02309 789 Pfam Calcium-binding EGF domain 331 369 IPR001881 GO:0005509
Viun9g02309 789 ProSiteProfiles Protein kinase domain profile. 458 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02309 789 ProSitePatterns Spider toxin CSTX family signature. 335 361 IPR011142 -
Viun9g02309 789 FunFam Wall-associated receptor kinase 2 428 533 - -
Viun9g02309 789 ProSiteProfiles EGF-like domain profile. 331 368 IPR000742 -
Viun9g02309 789 SMART serkin_6 458 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02309 Viun-Chr9 32555609 32558905 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02309 18 739 Receptor kinase-like Gene Family AT1G21230 42.350 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Viun9g02309 PK_Tyr_Ser-Thr 1.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02309 - - vum:124835050 1180.24