Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02260 ATGTCAAGAAATGCATTAACTCTTTTTATCTTGTTTCTTAATATCTCCTTGTGTCCTTCCATCTCTGCTCTGAACCAGGAAGGCCTCTCTCTACTGTCATGGCTTTCAACATTTAACTCCTCCAACTCTGTCTCTGCCTTCTCTTCATGGGATCCAACAGACCAAGATCCTTGCACATGGGATTACATAACATGTTCCAAAGAAGGGTTTGTGTCAGAGATCATAATAACATCCATAGATATGCGTAGCAGCTTCCCAACGCAGGTCCTTTCTTTTGGCCACCTCACCACTCTTGTGATCTCAAATGGGAATCTCACGGGTGAGATTCCAGGTTCAGTGGGAAACTTGTCCTCCTTGGTCACTTTGGATCTTAGCTTCAATGCTTTGTCAGGAAGCATTCCAGAAGAAATAGGAATGCTAGCCAAGCTGCAGTTGTTATTGTTGAATTCCAATTCCTTGAAGGGTGGAATTCCAACTACAATTGGAAACTGTTCAAAGCTTCAGCATCTGGCACTTTACGACAACCAGCTATCTGGAATGATACCTGGAGAAATAGGGCAGTTGAGTAATCTGGAAACTCTTAGAGCAGGAGGAAATCCAGGTATTCATGGAGAAATTCCAATGCAGATATCAGACTGCAAGGCCCTTGTTTTTCTGGGACTTGCAGTTACTGGGGTTTCTGGGGAGATTCCACCGAGTATAGGGGAGCTTAAAAATCTCAAGACACTTTCAGTCTACACGGCGCATCTCTCAGGTCATATCCCAGCAGAGATTCAGAACTGCTCAGCCTTGGAGGATTTGTTTCTGTATGAAAACCAGCTTTCTGGAAACATTCCTTATGAATTGGGCTCCATGCAAAACCTGAGGAGGGTGTTGCTGTGGCAGAACAATTTAACTGGGACCATTCCGGAAAGTCTTGGTAACTGCACAAATCTCAAGGTTATAGATTTCTCTTTGAATTCTCTGGAGGGTCAGATACCTGGGACTCTCAGTAATCTACTCTTTCTGGAGGAGTTTCTTTTGTCTGATAATAGTATTTATGGCGAAATACCTTCCTATGTTGGCAACTTTTCCAGGCTAAAGCAACTTGAATTGGACAACAACAAATTCTCCGGGCAGATTCCACCTGTTATGGGACAACTGAAGGAACTCACCCTCTTTTATGCTTGGCAGAATCAACTGAATGGAAGTATACCAACAGAACTTTCCAACTGTGATAAACTTGAAGCACTTGATCTTTCGCACAATTTCCTCACTGGCTCTATTCCAAGTGCACTCTTTCATCTGGGGAATTTGACTCAGTTGTTGCTGATATCAAACAGACTTTCAGGTCAAATTCCAGCTGATATTGGCAGTTGCACTAGTTTGATCAGGTTACGGCTGGGATCAAATAACTTTACTGGTCAAATTCCACCAGAAATAGGTCATTTAAGAAGTTTGAGCTTTCTTGAATTGTCAAATAATCTACTCAGTGGAGATATTCCCTCTGAGATAGGTAACTGTGCTCATCTAGAATTGCTTGACTTGCACTGCAATGTGCTGGAAGGAAGCATTCCTTCCTCGTTGAAATTCCTAGTTGGTCTCAATGTGTTAGATCTTTCTGCAAACAGAATAACGGGAAGCATTCCGGAGGATTTGGGCAAACTGAAATCTCTAAATAAGTTTATTTTAAGTGGAAACCTTATCTCTGGTGTGATCCCAGGGACACTGGGGCAGTGTAAGGATTTGCAGTTGCTGGATATAAGTAACAATAGGATCACTGGTTCTATTCCAGATGAGATTGGTCATTTGCAAGGATTAGATATCCTCTTGAACTTGAGTTGGAATTCACTTAGTGGCCCCATTCCAGGGACCTTCTCAAATCTCTCAAAACTATCCATCTTGGACCTCTCTCACAACAAGCTCACAGGTACACTCACTGTATTGGTTAGTCTTGACAATCTTGTGTCTTTAAATGTCTCCTATAATAGCTTTTCTGGTACTCTTCCTGATACGAAGTTCTTCCGGGATCTACCCTCCGCTGCATTTGCTGGTAACCCTGACCTTTGCATCAGCAAATGTTATACAAGTGAAAATGGCCAGGGCTTCAACAAGTCAATAAGAAATGTTATTGTCTACACTTTCCTTGGGGTTGTTTTAACTTCTGTTTTTGTCACTTGTGGAGTAATTTTAGCTCTCCGTATTCATGGGGGAAACTTTGGCAGGAATTTTGATAGTGATGAAATGGAATGGGCTTTCACTCCATTCCAGAAAGTCAACTTCTCCATTGATGACATTTTAACAAAGTTGTCAGAATCAAACATTGTCGGAAAGGGTTGCTCAGGAATTGTTTATCGCGTAGAGACTCCTATGAAACAGATTATTGCAGTGAAGAAACTATGGCCAATAAAGAAGGAAGAGCCACAAGAGAGAGATCTGTTTACTGCAGAAGTTCAGACCCTTGGATCAATAAGACACAAGAATATAGTGAGACTTTTAGGTTGCTGTGACAATGGAAGAACTAGATTGCTCTTGTTTGATTACATATGTAATGGAAGTTTGTTCGGACTGCTTCATGAAAAGAGATTGTTCTTGGATTGGGATGCGAGGTATAAGATCATACTGGGAGCAGCTCATGGTTTAGAATATCTTCATCACGATTGTATCCCTCCAATCGTACACAGGGATATTAAGGCTAACAACATCTTAGTAGGTCCACAATTTGAAGCCTTTCTTGCAGATTTTGGCCTTGCAAAGCTCGTGAGTTCCTCAGAGTGTTCAGGGGCCTCTCATACAGTTGCAGGTTCTTATGGATACATTGCTCCTGAATATGGATACAGTTTAAGGATCACAGAAAAGAGTGATGTATACAGTTTCGGTGTTGTACTTCTTGAGGTCTTAACGGGGATGGAACCAACTGATAACAGTATTCCAGAGGGTGCCCACATTGTCACATGGGTTAGCAACGAAATACGAGAGAAAAGAAGGGAATTTACATCCATCCTTGATCAGCAACTAGTATTGCAGAGTGGAACAAAAACCTCTGAGATGCTTCAAGTTCTAGGAGTGGCTCTCCTCTGTGTGAATCCATCACCAGAAGAAAGGCCTACTATGAAAGACGTAACAGCAATGCTCAAGGAGATCAGGCTTGAAAATGATGACTTCGAAAAACCAAATTTTCTCCATAAAGGCATGGTTGTGAATCCAAAAGCAGCAGTTCACTGTTCAAGTTTCTCCAGATCATGTGAACCATTAATAATAGAATCAACATCTTCTTCTTCTTCTTCTTAG 3270 0.4162 MSRNALTLFILFLNISLCPSISALNQEGLSLLSWLSTFNSSNSVSAFSSWDPTDQDPCTWDYITCSKEGFVSEIIITSIDMRSSFPTQVLSFGHLTTLVISNGNLTGEIPGSVGNLSSLVTLDLSFNALSGSIPEEIGMLAKLQLLLLNSNSLKGGIPTTIGNCSKLQHLALYDNQLSGMIPGEIGQLSNLETLRAGGNPGIHGEIPMQISDCKALVFLGLAVTGVSGEIPPSIGELKNLKTLSVYTAHLSGHIPAEIQNCSALEDLFLYENQLSGNIPYELGSMQNLRRVLLWQNNLTGTIPESLGNCTNLKVIDFSLNSLEGQIPGTLSNLLFLEEFLLSDNSIYGEIPSYVGNFSRLKQLELDNNKFSGQIPPVMGQLKELTLFYAWQNQLNGSIPTELSNCDKLEALDLSHNFLTGSIPSALFHLGNLTQLLLISNRLSGQIPADIGSCTSLIRLRLGSNNFTGQIPPEIGHLRSLSFLELSNNLLSGDIPSEIGNCAHLELLDLHCNVLEGSIPSSLKFLVGLNVLDLSANRITGSIPEDLGKLKSLNKFILSGNLISGVIPGTLGQCKDLQLLDISNNRITGSIPDEIGHLQGLDILLNLSWNSLSGPIPGTFSNLSKLSILDLSHNKLTGTLTVLVSLDNLVSLNVSYNSFSGTLPDTKFFRDLPSAAFAGNPDLCISKCYTSENGQGFNKSIRNVIVYTFLGVVLTSVFVTCGVILALRIHGGNFGRNFDSDEMEWAFTPFQKVNFSIDDILTKLSESNIVGKGCSGIVYRVETPMKQIIAVKKLWPIKKEEPQERDLFTAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGPQFEAFLADFGLAKLVSSSECSGASHTVAGSYGYIAPEYGYSLRITEKSDVYSFGVVLLEVLTGMEPTDNSIPEGAHIVTWVSNEIREKRREFTSILDQQLVLQSGTKTSEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRLENDDFEKPNFLHKGMVVNPKAAVHCSSFSRSCEPLIIESTSSSSSS 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02260 1089 Gene3D Ribonuclease Inhibitor 423 695 IPR032675 -
Viun9g02260 1089 Gene3D Ribonuclease Inhibitor 220 324 IPR032675 -
Viun9g02260 1089 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Viun9g02260 1089 SUPERFAMILY L domain-like 346 597 - -
Viun9g02260 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Viun9g02260 1089 PRINTS Leucine-rich repeat signature 408 421 - -
Viun9g02260 1089 PRINTS Leucine-rich repeat signature 622 635 - -
Viun9g02260 1089 ProSiteProfiles Protein kinase domain profile. 763 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02260 1089 SUPERFAMILY Protein kinase-like (PK-like) 750 1046 IPR011009 -
Viun9g02260 1089 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Viun9g02260 1089 SUPERFAMILY L domain-like 40 395 - -
Viun9g02260 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 739 841 - -
Viun9g02260 1089 Pfam Protein kinase domain 765 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02260 1089 Pfam Leucine rich repeat 604 657 IPR001611 GO:0005515
Viun9g02260 1089 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Viun9g02260 1089 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Viun9g02260 1089 SUPERFAMILY L domain-like 565 663 - -
Viun9g02260 1089 Gene3D Transferase(Phosphotransferase) domain 1 842 1057 - -
Viun9g02260 1089 SMART serkin_6 763 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02260 1089 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Viun9g02260 1089 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 305 1040 - -
Viun9g02260 1089 Gene3D Phosphorylase Kinase; domain 1 735 841 - -
Viun9g02260 1089 Pfam Leucine Rich Repeat 407 428 IPR001611 GO:0005515
Viun9g02260 1089 Gene3D Ribonuclease Inhibitor 325 422 IPR032675 -
Viun9g02260 1089 SMART LRR_typ_2 622 641 IPR003591 -
Viun9g02260 1089 SMART LRR_typ_2 477 501 IPR003591 -
Viun9g02260 1089 SMART LRR_typ_2 525 548 IPR003591 -
Viun9g02260 1089 SMART LRR_typ_2 285 309 IPR003591 -
Viun9g02260 1089 SMART LRR_typ_2 645 678 IPR003591 -
Viun9g02260 1089 SMART LRR_typ_2 140 164 IPR003591 -
Viun9g02260 1089 SMART LRR_typ_2 429 453 IPR003591 -
Viun9g02260 1089 SMART LRR_typ_2 357 381 IPR003591 -
Viun9g02260 1089 SMART LRR_typ_2 549 572 IPR003591 -
Viun9g02260 1089 SMART LRR_typ_2 116 139 IPR003591 -
Viun9g02260 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 842 1056 - -
Viun9g02260 1089 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Viun9g02260 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Viun9g02260 1089 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Viun9g02260 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Viun9g02260 1089 Gene3D Ribonuclease Inhibitor 23 219 IPR032675 -
Viun9g02260 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02260 Viun-Chr9 32000505 32004609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02260 23 1076 Receptor kinase-like Gene Family AT5G56040 46.863 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun9g02260 Pkinase 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02260 - - gmx:100807225 1905.57