Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02258 ATGTTCCCACATACCCTTATTACCGCGGCTGCCCTTCAACGCATGTTGCATCATCACTTTCCCACCCCAATGGAACAACGTTCGAGGTGGAAACCCAACATCGAGGTCGCGCCCAATTGTCCTCGTTGCGCTTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCTTGTCGCAGCCCCGCTATTTCTGCAAAGCCTGCAGACGCTACTGGACCAAAGGCGGCTCTCTCCGCAACGTCCCCGTCGGCGGCGGCTGCCGCAAGAACCGCCGCGCCAAGTCCTCCTCGCGCCACAACCAAACCCAACGCTCTTTCACCTCTCATCAAACCCATCCAAACAACAACGCCTCTCGTGAAATAGACATGGCCCTTGTCTTCGCCAAATTCTTGAACCCCAAACAAAACGTTGGAGAGGATAACAATGCCTCCTCTTCTTCCAACAATTACTTCACACCCGACACCGTTCAAACCGAGAATGATACTGCAGTTGTTCAGTCGCCGAACAAGGGTTTGTCGTCGGATCCTGCCATTGTTGAATCCGACTCCGACGCGGTGGTGGCAATTGAGAATTTCGGTGGGGAGGAATTGAGTTTGGGTGAGATTGACGACTTGGAGAGGCTTCTGGGTGTGTGTGGTGATGAAGACGGTCTCTGGTGTGATGCTACCTTGTCCTCTTCCGTTACTTGGGAACCACCCGTGAAGGAATTGGAATGCTCGATGCCGTTGAGTGAAAACGATGCCCAATTATTACCCATCACTTCTGCTTCTTCTACCGTGCATTCAATGAGTGACACTTGCTGGAGCAGTTGGGGTTCCTTAGATCTTTCAGCCATGGAAGTGTTCTCATCAACTCCTTGA 861 0.518 MFPHTLITAAALQRMLHHHFPTPMEQRSRWKPNIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKNRRAKSSSRHNQTQRSFTSHQTHPNNNASREIDMALVFAKFLNPKQNVGEDNNASSSSNNYFTPDTVQTENDTAVVQSPNKGLSSDPAIVESDSDAVVAIENFGGEELSLGEIDDLERLLGVCGDEDGLWCDATLSSSVTWEPPVKELECSMPLSENDAQLLPITSASSTVHSMSDTCWSSWGSLDLSAMEVFSSTP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02258 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 157 IPR045174 GO:0003700|GO:0006355
Viun9g02258 286 Pfam Dof domain, zinc finger 38 92 IPR003851 GO:0003677|GO:0006355
Viun9g02258 286 MobiDBLite consensus disorder prediction 82 116 - -
Viun9g02258 286 ProSitePatterns Zinc finger Dof-type signature. 40 76 IPR003851 GO:0003677|GO:0006355
Viun9g02258 286 ProSiteProfiles Zinc finger Dof-type profile. 38 92 IPR003851 GO:0003677|GO:0006355
Viun9g02258 286 MobiDBLite consensus disorder prediction 99 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02258 Viun-Chr9 31986704 31988386 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02258 30 278 C2C2-Dof Transcription Factor Family AT3G52440 37.743 6.10e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun9g02258 zf-Dof 3.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02258 - - vra:106778892 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02258 9 31986704 31988386 Viun9g02258 9 31986704 31988386 ECH