Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02240 ATGGACGACAACTTATGTGATATTTTCGACGACAAAGAGTTTGGAAGCGACCACTTTGGTGGGGACGATCTCTTCGCCATTTTGGAGAGCCTAGAATCCGACTTAACCCATTTCCCTCCCATTAACCAAGAAGCTGTTGCTGTCTCCAAAGAGAACGAGGATGTCTCAAGATTGGTGTCCCAAAAGTCTACCTCCTCAAGTGCTCCACAAGACTATTCCGAAACTGAGTTTGAAACCTCATCAAAAACCAAGAGACAGAAGCTTACTCCCACCACGTCAGAGGAAGCAAACCCAGATGGACAACAAAGGATGTCTCACATCACCGTTGAACGCAACCGGAGAAAGCAAATGAACGAACACTTGTCCGTCTTGAGGTCGCTTATGCCTTGCTTTTATGTCAAACGGGGAGATCAAGCATCAATAATCGGAGGTGTGGTTGATTACATCAACGAGTTGCAGCAGGTGCTCCAAGCCCTGGAGGCCAAGAAACAAAGGAAAGTTTACAGTGAAGTGTTAAGCCCTAGGCTTGTTTCAAGCCCAAGGCCCTCACCTCTGAGTCCTCGGAAACCACCTCTGAGCCCGAGACTAAACCTGCCCATTAGCCCAAGAACTCCACAACCAGGAAGTCCTTACAGGCCAAGGTTGCAGCAAGGGTACAACAACATGATTTCACCAACCATGTCCAACTCTCTGGACCCTTCTCCCACTTCTTCTGCTAATTCCTCCATCAACGACAACATCAACGAGCTTGTTGCGAACTCCAAATCCGCCACTGCTGATGTGGAGGTCAAGTTTTCAGGGCCCCACGTTCTTCTCAAAACGGTGTCTCAACGAATTCCCGGACAGGCTCTGAAGATAATCACAGCGCTCGAAGATCTCGCACTAGAAATCCTCCATGTCAACATTAACTGTGCTGCTGATGATACCATGTTAAACTCATTCACCATCAAGATTGGAATTGAATGCCAACTGAGTGCAGAAGAATTGGCTCAACAAATCCAGCAAACATTCTGCTAA 1017 0.4739 MDDNLCDIFDDKEFGSDHFGGDDLFAILESLESDLTHFPPINQEAVAVSKENEDVSRLVSQKSTSSSAPQDYSETEFETSSKTKRQKLTPTTSEEANPDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPGSPYRPRLQQGYNNMISPTMSNSLDPSPTSSANSSINDNINELVANSKSATADVEVKFSGPHVLLKTVSQRIPGQALKIITALEDLALEILHVNINCAADDTMLNSFTIKIGIECQLSAEELAQQIQQTFC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02240 338 MobiDBLite consensus disorder prediction 210 241 - -
Viun9g02240 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 101 152 IPR011598 GO:0046983
Viun9g02240 338 Coils Coil 145 165 - -
Viun9g02240 338 Gene3D - 92 166 IPR036638 GO:0046983
Viun9g02240 338 SMART finulus 107 158 IPR011598 GO:0046983
Viun9g02240 338 Pfam Helix-loop-helix DNA-binding domain 102 153 IPR011598 GO:0046983
Viun9g02240 338 MobiDBLite consensus disorder prediction 58 76 - -
Viun9g02240 338 CDD bHLH_AtFAMA_like 104 175 - -
Viun9g02240 338 MobiDBLite consensus disorder prediction 174 241 - -
Viun9g02240 338 MobiDBLite consensus disorder prediction 84 105 - -
Viun9g02240 338 FunFam Transcription factor SPEECHLESS 93 167 - -
Viun9g02240 338 MobiDBLite consensus disorder prediction 49 105 - -
Viun9g02240 338 PANTHER TRANSCRIPTION FACTOR FAMA 4 337 IPR044283 GO:0003700|GO:0010052
Viun9g02240 338 MobiDBLite consensus disorder prediction 180 209 - -
Viun9g02240 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 175 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02240 Viun-Chr9 31843790 31846965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02240 1 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.557 8.12e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun9g02240 HLH 7.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02240 K20558 - gmx:100777437 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02240 9 31843790 31846965 Viun9g02240 9 31843790 31846965 ECH