Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02219 ATGAAGAGATTTAGAAAATCATTCAAATCTCTTCCCTATAACAGAGTTCTCTCTGGAAGTTTTAGTTCTACAAAGAAAATTCTTGATCCCCAGGGTCCTTTCCTTCAAAAGTGGAATAAGATATTTGTATTATCATGTCTTATTGCTGTGTCACTTGATCCTTTGTTCTTCTATGTTCCTGTGATCGATGATAACAATAAATGTCTTTCTCTGGACCGAAAAATGGAAATTACAGCAACTGTTTTAAGATCTTTCTCCGATATTTTTTATATAATCCATATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGTAATAGCAATGCGGTATCTATCATCATACTTCTTAATTGACATTCTTGCAGTTCTTCCCCTCCCGCAGGTGGCAATTCTAATTATCATTCCCAAGTTGAGGGGCTCTGAATCACTGAATACAAAGACCCTGCTGAAATTTATTGTCTTCTTCCAATATATCCCACGATTTTTGCGATTAATTCCATTATATAAAGAAGTTACTAGGACCTCTGGCATCCTCACTGAAACAGCTTGGGCTGGAGCTGCGTTCAATCTCTTTCTATACATGCTAGCAAGTCATGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAAGATGCGTGTCGAGGAAATAGCACATGTAACACAGAAGCTATGTATTGTGATAATCATCAAGTTTTGGGCACAATTTCAGTATTCCTGAATGCTTCTTGCCCAATACAGGACCAAAATACAGCACTCTTTAATTTTGGAATATTTCTTGATGCCCTTCAATCTGGAGTTGTGGAGTCAAGAGATTTCCCACAGAAGTTCTTTTATTGTTTTTGGTGGGGCCTGCGAAATTTGAGTTCTCTTGGTCAGAACCTTGCAACAAGTACCTATGTTTGGGAAATATGCTTTGCAATTTTCATTTCAATTGCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACGACTACCAGATTGGAGGAAATGAGGGTGAAAAGGAGGGATGCTGAACAGTGGATGTCTCATCGATTACTCCCTGACAGCCTGAGAGAAAGAATCAGACGACATGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACAACTTGATCCGAGATCTTCCAAAGGATTTGAGAAGGGATATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGGGTGCCAATGTTTGAGAAAATGGATGAGCAACTTCTGGATGCAATGTGTGACAGACTCCAGCCAGTGCTATACACAGAAGAAAGCTGCATTGTCCGGGAAGGAGACCCTGTTGATGAGATGCTGTTCATAATGCGCGGCAAGCTATTGACTGTGACCACTAATGGTGGAAGAACAGGCTTCTTTAACTCTGAATACCTCAAGGCTGGTGACTTTTGTGGAGAGGAACTTCTGACATGGGCTTTAGATCCTCACTCCTCATCCAACCTTCCCATATCAACTAGGACTGTCCAAACTCTTTCAGAAGTAGAAGCATTTGCTCTAAAAGCCGATGACTTGAAGTTTGTTGCTTCACAGTTCCGGCGCCTCCATAGTAAGCAACTTCGTCACACTTTCAGGTTTTATTCACAACAATGGCGTACATGGGCTGCATGTTTCATACAAGCAGCGTGGAGGCGTTATAGTAAAAAGAAGCTGGAAGAGTCTCTGAGAGAAGAAGAGAATCGGTTGCAAGATGCATTGGCCAAAGCTGGTGGTAGCTCACCTAGTTTAGGTGCCACAATATATGCTTCAAGGTTTGCAGCTAATGCACTCAGACTTTTACGTAGAAATAGCACAAGAAAGACCAGGGTGCCTGAAAGAATATCACCCATGTTGCTGCAGAAGCCTGCTGAACCTGATTTTACTTCTGAAGAACGATAG 1980 0.4106 MKRFRKSFKSLPYNRVLSGSFSSTKKILDPQGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDNNKCLSLDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDAWVIAMRYLSSYFLIDILAVLPLPQVAILIIIPKLRGSESLNTKTLLKFIVFFQYIPRFLRLIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQDACRGNSTCNTEAMYCDNHQVLGTISVFLNASCPIQDQNTALFNFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLATSTYVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDNLIRDLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLQPVLYTEESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRNSTRKTRVPERISPMLLQKPAEPDFTSEER 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02219 659 Pfam Ion transport protein 38 357 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun9g02219 659 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 654 - -
Viun9g02219 659 Gene3D Helix hairpin bin 356 421 - -
Viun9g02219 659 SUPERFAMILY Voltage-gated potassium channels 29 352 - -
Viun9g02219 659 SMART cnmp_10 430 561 IPR000595 -
Viun9g02219 659 ProSiteProfiles cAMP/cGMP binding motif profile. 430 514 IPR000595 -
Viun9g02219 659 Gene3D - 41 354 - -
Viun9g02219 659 Pfam Cyclic nucleotide-binding domain 451 541 IPR000595 -
Viun9g02219 659 SUPERFAMILY cAMP-binding domain-like 359 552 IPR018490 -
Viun9g02219 659 FunFam Cyclic nucleotide-gated ion channel 1 428 546 - -
Viun9g02219 659 Coils Coil 582 602 - -
Viun9g02219 659 Gene3D Jelly Rolls 428 548 IPR014710 -
Viun9g02219 659 CDD CAP_ED 430 561 IPR000595 -
Viun9g02219 659 FunFam Cyclic nucleotide-gated ion channel 1 357 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02219 Viun-Chr9 31625530 31633705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02219 1 658 Ion Channels AT5G53130 82.602 0.0 1113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02219 K05391 - gmx:100815774 1257.66