Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02206 ATGAAAATCCCCAATCCCATACTCACGCTCTTCATCCTCTTGAACCCTCCACTAGTACTGGCAAACATAGAAACATGTTCAGACAGCGTTTGCCAGAGTGGTGAGCCAGTGATCCGATTCCCCTTCCGCATAGAAGGAAAACACGCAGAAGCATGCGGATACCCAGGCTTCATAGTCTCCTGCAACCAGAACCCCCAAACACTCCTCAACCTACCAAATTGGGACCCACTCAAAATCCAAACGATAAACTACGCCGCTCAGCAACTGTGGGTCAACGATCCCGGCAACTGCCTCCCCAAACGCCTCCTCTCTCTCAATCTCTCCGCCTCTCCCTTCCGCGCCGTTTACCACCAGCAGTTCACCTTCTTCAACTGCTCCGTCAATTTGCCGAACCTCGTTCGTCGATACCGTCCCATAGGTTGCCTCAGCGATCCTCCCAAGTACGCCGTTTTCGCCACGCCTTCTACGACTGTGGTTAGCCACTTGTCTTCCGTCTGTGATTTAGTGGCCACGGTGAAGGTGCCTGTGCAGTCACCGTTTTACGATCAAGTCACATCGTCGGAACTCGGCGAGGATCTGCGTCTCACGTGGGAATCGCCGGCGTGCGGGAGGTGCGAGTCCCACGGTGGCCGGTGCGGCTTCAGGAGTGACGACACTTTTGAGCTTGATTGCTTTGGTTTTCCTTCGAAAGGTGGCACGATTTGTATGTACATGTACAATGATCATTTTAAACATTCTGTCAAAATGAGAACCATCCGCAACAATAAGGATAAAAAAGGGATTTCTCGTGGTGCCCGTTACGCCATAGCCATATGCATAGGGGTACCAGCAATGTTATGCTCCTTTGGAGTATTGAGTTGCATCTGCAGCTGGCTCAAAATGAGGAATCATGATGGACCTTGGGCTCACGAAACTGTGGCAGATTTTGAGGCTCTAGCGGGCTCAAGGCCCACATCAGTGTCGGGCCTGGACAGACCCACAATCGAATCGTACCCAAAAATAGTCATAGGTGAGAACAGACGGTTACCGAAGAAGAGTGAGAAAACGTGCTCAATATGTCTGTCAGAGTACATGCCAAAAGAGACAGTGAAAAGCATACCTGAATGCGGACACTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCTTCGTGCCCAATTTGCCGAACTTCTCCCCGAAAGTTTCCACAACCGCGTGCTCGATCATCACCATAA 1224 0.509 MKIPNPILTLFILLNPPLVLANIETCSDSVCQSGEPVIRFPFRIEGKHAEACGYPGFIVSCNQNPQTLLNLPNWDPLKIQTINYAAQQLWVNDPGNCLPKRLLSLNLSASPFRAVYHQQFTFFNCSVNLPNLVRRYRPIGCLSDPPKYAVFATPSTTVVSHLSSVCDLVATVKVPVQSPFYDQVTSSELGEDLRLTWESPACGRCESHGGRCGFRSDDTFELDCFGFPSKGGTICMYMYNDHFKHSVKMRTIRNNKDKKGISRGARYAIAICIGVPAMLCSFGVLSCICSWLKMRNHDGPWAHETVADFEALAGSRPTSVSGLDRPTIESYPKIVIGENRRLPKKSEKTCSICLSEYMPKETVKSIPECGHCFHAQCIDEWLPLNASCPICRTSPRKFPQPRARSSP 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02206 407 Pfam Wall-associated receptor kinase galacturonan-binding 26 93 IPR025287 GO:0030247
Viun9g02206 407 SUPERFAMILY RING/U-box 343 395 - -
Viun9g02206 407 CDD RING-H2_EL5-like 350 392 - -
Viun9g02206 407 Pfam Wall-associated receptor kinase C-terminal 163 225 IPR032872 -
Viun9g02206 407 SMART ring_2 350 391 IPR001841 -
Viun9g02206 407 ProSiteProfiles Zinc finger RING-type profile. 350 392 IPR001841 -
Viun9g02206 407 Pfam Ring finger domain 349 392 IPR001841 -
Viun9g02206 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 396 IPR013083 -
Viun9g02206 407 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 395 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02206 Viun-Chr9 31531411 31534706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02206 24 395 C3H Transcription Factor Family AT2G46495 34.555 7.95e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02206 - - vun:114163980 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02206 9 31531411 31534706 Viun9g02206 9 31531411 31534706 ECH