Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02173 ATGGACTTGGAAAGCGTTGAGTGTGTGTCATCCTCGGATGGCATGGATGAGGATGAGATCCACACCAATCATCATCACTCTGAGTTTTCTTCCACAAAGCCTCGCAATGGAGGCACCAATAACGTTAATTCTGTGGGGTCCACCGCTCTTCCTCCGGCAACCAGCGTCCATGAGTTGCTGGAATGTCCTGTGTGTACTAATTCAATGTACCCTCCAATCCACCAGTGTCACAATGGCCACACGCTCTGTTCCACTTGTAAAACAAGGGTGCACAACCGATGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTTTGGCACTGGAAAAGGTGGCTGAATCACTTGAGCTACCTTGCAAGTACTTCTCCCTTGGATGTTCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGCAATTATAGACCATATAGTTGCCCTTATGCTGGATCAGAGTGTTCTGTCGTGGGAGATATTCCCTTCCTTGTTGCACATTTAAGGGACGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGTTACGTGAAGTCAAATCCGCGTGAAGTGGAGAATGCAACCTGGATGCTCACAGTGTTTCATTGTTTTGGTCAATATTTCTGCCTTCATTTTGAAGCTTTCCAGCTTGGCATGGCACCTGTTTACATGGCATTCCTTCGTTTTATGGGTGATGAGAATGAGGCTCGGAATTATAGCTATAGCCTAGAGGTTGGGGCCAATGGTAGGAAACTCATCTGGGAGGGTACGCCACGAAGTGTTCGAGATAGTCACCGGAAAGTGAGGGATAGCCATGATGGGCTCATCATTCAAAGAAATATGGCTCTATTTTTCTCTGGTGGGGACAGAAAGGAGCTGAAACTCAGAGTTACAGGAAGAATATGGAAGGAGCAACAGAATTCGGATGCTGGTGTGTGCATGCCAAATCTCTGTAGTTGA 975 0.4626 MDLESVECVSSSDGMDEDEIHTNHHHSEFSSTKPRNGGTNNVNSVGSTALPPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYFSLGCSEIFPYYSKLKHETVCNYRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNSDAGVCMPNLCS 324
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02173 324 MobiDBLite consensus disorder prediction 14 31 - -
Viun9g02173 324 FunFam E3 ubiquitin-protein ligase SINAT3 11 113 - -
Viun9g02173 324 FunFam E3 ubiquitin-protein ligase SINAT3 114 170 - -
Viun9g02173 324 CDD RING-HC_SIAHs 60 98 - -
Viun9g02173 324 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Viun9g02173 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 104 IPR013083 -
Viun9g02173 324 CDD Sina 176 304 - -
Viun9g02173 324 SUPERFAMILY TRAF domain-like 115 307 - -
Viun9g02173 324 FunFam E3 ubiquitin-protein ligase SINAT5-like 171 303 - -
Viun9g02173 324 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 303 IPR008974 GO:0005515
Viun9g02173 324 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Viun9g02173 324 MobiDBLite consensus disorder prediction 1 48 - -
Viun9g02173 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 168 IPR013083 -
Viun9g02173 324 MobiDBLite consensus disorder prediction 32 48 - -
Viun9g02173 324 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
Viun9g02173 324 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 309 - -
Viun9g02173 324 SUPERFAMILY RING/U-box 54 101 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun9g02173 Viun-Chr9 31263496 31267160 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02173 30 310 C3H Transcription Factor Family AT2G41980 75.801 1.85e-164 458
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02173 K04506 - gmx:100810573 657.521