Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02133 ATGTATATATTCCACTTCGTATTTTCGGCTTTGCTCGCTCATTCTGCTGCTCCATCGTCTCATCGCAACACAAAGCAGTACTTGGGTGCTATCATTTTTTCGTCTAAACCCTCTAAACTTCCCAAAATACAATCTTATTCTCATCATCAACATACCCCATATGATGAAGGGGTGTCCAATGCTTTCGATTATGGATTGTGGATTCGGAGTCCAAGGAGTGTTAGAGAGCGTAAGGGCAAGTTTATGAAGAGTATGGGACTGAGTAGCGTGGATTTGACTGCCCTAGAAAGTGAAAATTCAGTAGATGTGGATAGTGTTCTGTGTGAAGAAGGAAAGGATAGAGTTGAATTTACTAGTGGAGCTGTGACCCAAAATTGTGTTGTTGAAGAAGAATTCTGTTCAAGCCGGACATCAATGTCTTGTTTGCATAGGGAGGATTCTTCAGAGGAGCTTGGTTTGGTTGATAACTCGCCGGGTGGAGATGAGAATTTGGAGGGTAATGTGGATCAAGAGATGAGTGATGGAAGAGATCTGGATTCAGATCGATTGGTGGTTATGGCAGAGCCTAAGGATTCAGAGAATGGCTTTAGGGAAACGGATGCCAATGCTTCTGGTGGGAGGACAAGCCAGGTTAGAAAGGGTTGGTTCAGGAGACTGCGGTCAATATCATGCATGGTTAATAGTCACGGGGAAGGTGATTTTGGAAGAGAAGGCCTTGGTGAAATGCCAGGGTGTAGGCTTCCGAAAGTTAAGGTCCGTCAGTCAAAGAAGCCAATGAAGGAACTTTCAGCCCTTTACATGAGTCAAGATATCAAAGCTCATGAAGGTTCAATTTTGACCATGAAGTTCAGTCCTGATGGGCAGTATCTTGCTAGTGGTGGTGAAGATGGGGTTGTGCGCTTGTGGCAAGTGGTTGAGGATGATAGATGTAATGAAGTTGATATTCCAGAAATTGATCCATCTTGCATTTATTTCACCGTGAATAATCTCTCTGAATTGACACCACTATTTATTGATAAAGAAAAAATAAGCAAACTGAAGAGCCTGAAAAAAACATCAGATTCTGCTTGCGTAGTTATTCCTCCTAAGATCTTCCGGTTGTTGGAAAAACCATTGCATGAATTTCATGGGCATAGAGGTGAAGTTTTGGATCTCTCTTGGTCAAACAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGACTATGGCAAGTGAATAATGACCGTTGCTTGAAGGTTTTCTCACACAGTAATTATGTGACGTGTATACAATTCAATCCTGTGGATGATAACTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGACAATTGCTGATTGTCACGTTGTTGATTGGATTAGTATCAAAGATATAGTGACTGCAGTATGTTATCGGCCTGATGGGAAGGGAGGGATCATTGGCTCCTTGGCTGGCAATTGTCGATTTTACAATGTATCAGAGAATCGCTTGCAATTAGATTCCCAAATATGCTTAATTGGTAAAAAGAAGCTTCTTGGCAGAGAGATTACTGGGTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTCTCGTGTGCTGATTCACAAGTCAGAATCTTAGACGGCCTTAATGTGATTGGCAAGTACAAAAGCCTTAGCACAGGGAGCCCAATATGTGCATCGTTTACTTCTGATGGGAAACATATTGTATCAGCATGTGAGGACTCTAACGTATACCTATGGAATGTTAGTGAGGAAGAGTCTAATCCTGTGAAAGCTAAGAAGATTACGTCTTGCGAGCGATTTTGCTCAAATGCATCTGTAGCAGTACCTTGGCATGGTTTGAAATCTAAAAATATTGAAAACGAGCATCAGTTGAATTTGTTGGATAAAGGATCATCTCAAGTTTTTCAGCTTAGTCCACCTGCATCCTTCTCTCTGAGCCAAAAGTTTGTTTTGGAGTCTTTTTCAAAGGGGTCTGCAACTTGGCCCGAGGAGAAGCTTCCTGTTTCAAGCTCCAAGGCTAAAACATCACTGATTCACCAATCTGAATACAATTTCTTGAAGTCTTCTTGCAAGAGTACCTCATCTGCTCATGCGTGGGGTATGGTCATTGTCACTGCTGGGTGGGATGGTAGGATAAAATCATTCCACAATTATGGGCTACCTATACCCGTTTGA 2178 0.4164 MYIFHFVFSALLAHSAAPSSHRNTKQYLGAIIFSSKPSKLPKIQSYSHHQHTPYDEGVSNAFDYGLWIRSPRSVRERKGKFMKSMGLSSVDLTALESENSVDVDSVLCEEGKDRVEFTSGAVTQNCVVEEEFCSSRTSMSCLHREDSSEELGLVDNSPGGDENLEGNVDQEMSDGRDLDSDRLVVMAEPKDSENGFRETDANASGGRTSQVRKGWFRRLRSISCMVNSHGEGDFGREGLGEMPGCRLPKVKVRQSKKPMKELSALYMSQDIKAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEDDRCNEVDIPEIDPSCIYFTVNNLSELTPLFIDKEKISKLKSLKKTSDSACVVIPPKIFRLLEKPLHEFHGHRGEVLDLSWSNNNYLLSSSVDKTVRLWQVNNDRCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWTIADCHVVDWISIKDIVTAVCYRPDGKGGIIGSLAGNCRFYNVSENRLQLDSQICLIGKKKLLGREITGFQFLPQDSNKVMVSCADSQVRILDGLNVIGKYKSLSTGSPICASFTSDGKHIVSACEDSNVYLWNVSEEESNPVKAKKITSCERFCSNASVAVPWHGLKSKNIENEHQLNLLDKGSSQVFQLSPPASFSLSQKFVLESFSKGSATWPEEKLPVSSSKAKTSLIHQSEYNFLKSSCKSTSSAHAWGMVIVTAGWDGRIKSFHNYGLPIPV 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02133 725 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 375 409 - -
Viun9g02133 725 SMART WD40_4 541 581 IPR001680 GO:0005515
Viun9g02133 725 SMART WD40_4 451 489 IPR001680 GO:0005515
Viun9g02133 725 SMART WD40_4 506 540 IPR001680 GO:0005515
Viun9g02133 725 SMART WD40_4 264 303 IPR001680 GO:0005515
Viun9g02133 725 SMART WD40_4 409 448 IPR001680 GO:0005515
Viun9g02133 725 SMART WD40_4 368 406 IPR001680 GO:0005515
Viun9g02133 725 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 415 IPR001680 GO:0005515
Viun9g02133 725 SUPERFAMILY WD40 repeat-like 267 716 IPR036322 GO:0005515
Viun9g02133 725 ProSiteProfiles Trp-Asp (WD) repeats profile. 560 590 IPR001680 GO:0005515
Viun9g02133 725 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 304 - -
Viun9g02133 725 MobiDBLite consensus disorder prediction 147 177 - -
Viun9g02133 725 PANTHER WD REPEAT DOMAIN 44 47 722 IPR040324 -
Viun9g02133 725 PRINTS G protein beta WD-40 repeat signature 393 407 IPR020472 -
Viun9g02133 725 PRINTS G protein beta WD-40 repeat signature 290 304 IPR020472 -
Viun9g02133 725 PRINTS G protein beta WD-40 repeat signature 435 449 IPR020472 -
Viun9g02133 725 Gene3D - 369 508 IPR015943 GO:0005515
Viun9g02133 725 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 304 IPR001680 GO:0005515
Viun9g02133 725 ProSitePatterns Trp-Asp (WD) repeats signature. 568 582 IPR019775 -
Viun9g02133 725 MobiDBLite consensus disorder prediction 188 207 - -
Viun9g02133 725 Gene3D - 254 368 IPR015943 GO:0005515
Viun9g02133 725 ProSiteProfiles Trp-Asp (WD) repeats profile. 415 449 IPR001680 GO:0005515
Viun9g02133 725 Gene3D - 509 717 IPR015943 GO:0005515
Viun9g02133 725 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 415 449 - -
Viun9g02133 725 Pfam WD domain, G-beta repeat 555 581 IPR001680 GO:0005515
Viun9g02133 725 Pfam WD domain, G-beta repeat 271 302 IPR001680 GO:0005515
Viun9g02133 725 Pfam WD domain, G-beta repeat 411 447 IPR001680 GO:0005515
Viun9g02133 725 Pfam WD domain, G-beta repeat 370 405 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02133 Viun-Chr9 31054593 31059157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02133 271 463 U-box Gene Family AT2G33340 23.529 8.20e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02133 - - gmx:100807177 1116.68