Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02132 ATGAAGAGTATGGGACTGAGTAGCGTGGATTTGACTGCCCTAGAAAGTGAAAATTCAGTAGATGTGGATAGTGTTCTGTGTGAAGAAGGAAAGGATAGAGTTGAATTTACTAGTGGAGCTGTGACCCAAAATTGTGTTGTTGAAGAAGAATTCTGTTCAAGCCGGACATCAATGTCTTGTTTGCATAGGGAGGATTCTTCAGAGGAGCTTGGTTTGGTTGATAACTCGCCGGGTGGAGATGAGAATTTGGAGGGTAATGTGGATCAAGAGATGAGTGATGGAAGAGATCTGGATTCAGATCGATTGGTGGTTATGGCAGAGCCTAAGGATTCAGAGAATGGCTTTAGGGAAACGGATGCCAATGCTTCTGGTGGGAGGACAAGCCAGGTTAGAAAGGGTTGGTTCAGGAGACTGCGGTCAATATCATGCATGGTTAATAGTCACGGGGAAGGTGATTTTGGAAGAGAAGGCCTTGGTGAAATGCCAGGGTGTAGGCTTCCGAAAGTTAAGGTCCGTCAGTCAAAGAAGCCAATGAAGGAACTTTCAGCCCTTTACATGAGTCAAGATATCAAAGCTCATGAAGGTTCAATTTTGACCATGAAGTTCAGTCCTGATGGGCAGTATCTTGCTAGTGGTGGTGAAGATGGGGTTGTGCGCTTGTGGCAAGTGGTTGAGGATGATAGATGTAATGAAGTTGATATTCCAGAAATTGATCCATCTTGCATTTATTTCACCGTGAATAATCTCTCTGAATTGACACCACTATTTATTGATAAAGAAAAAATAAGCAAACTGAAGAGCCTGAAAAAAACATCAGATTCTGCTTGCGTAGTTATTCCTCCTAAGATCTTCCGGTTGTTGGAAAAACCATTGCATGAATTTCATGGGCATAGAGGTGAAGTTTTGGATCTCTCTTGGTCAAACAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGACTATGGCAAGTGAATAATGACCGTTGCTTGAAGGTTTTCTCACACAGTAATTATGTGACGTGTATACAATTCAATCCTGTGGATGATAACTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGACAATTGCTGATTGTCACGTTGTTGATTGGATTAGTATCAAAGATATAGTGACTGCAGTATGTTATCGGCCTGATGGGAAGGGAGGGATCATTGGCTCCTTGGCTGGCAATTGTCGATTTTACAATGTATCAGAGAATCGCTTGCAATTAGATTCCCAAATATGCTTAATTGGTAAAAAGAAGCTTCTTGGCAGAGAGATTACTGGGTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTCTCGTGTGCTGATTCACAAGTCAGAATCTTAGACGGCCTTAATGTGATTGGCAAGTACAAAAGCCTTAGCACAGGGAGCCCAATATGTGCATCGTTTACTTCTGATGGGAAACATATTGTATCAGCATGTGAGGACTCTAACGTATACCTATGGAATGTTAGTGAGGAAGAGTCTAATCCTGTGAAAGCTAAGAAGATTACGTCTTGCGAGCGATTTTGCTCAAATGCATCTGTAGCAGTACCTTGGCATGGTTTGAAATCTAAAAATATTGAAAACGAGCATCAGTTGAATTTGTTGGATAAAGGATCATCTCAAGTTTTTCAGCTTAGTCCACCTGCATCCTTCTCTCTGAGCCAAAAGTTTGTTTTGGAGTCTTTTTCAAAGGGGTCTGCAACTTGGCCCGAGGAGAAGCTTCCTGTTTCAAGCTCCAAGGCTAAAACATCACTGATTCACCAATCTGAATACAATTTCTTGAAGTCTTCTTGCAAGAGTACCTCATCTGCTCATGCGTGGGGTATGGTCATTGTCACTGCTGGGTGGGATGGTAGGATAAAATCATTCCACAATTATGGGCTACCTATACCCGTTTGA 1935 0.416 MKSMGLSSVDLTALESENSVDVDSVLCEEGKDRVEFTSGAVTQNCVVEEEFCSSRTSMSCLHREDSSEELGLVDNSPGGDENLEGNVDQEMSDGRDLDSDRLVVMAEPKDSENGFRETDANASGGRTSQVRKGWFRRLRSISCMVNSHGEGDFGREGLGEMPGCRLPKVKVRQSKKPMKELSALYMSQDIKAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEDDRCNEVDIPEIDPSCIYFTVNNLSELTPLFIDKEKISKLKSLKKTSDSACVVIPPKIFRLLEKPLHEFHGHRGEVLDLSWSNNNYLLSSSVDKTVRLWQVNNDRCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWTIADCHVVDWISIKDIVTAVCYRPDGKGGIIGSLAGNCRFYNVSENRLQLDSQICLIGKKKLLGREITGFQFLPQDSNKVMVSCADSQVRILDGLNVIGKYKSLSTGSPICASFTSDGKHIVSACEDSNVYLWNVSEEESNPVKAKKITSCERFCSNASVAVPWHGLKSKNIENEHQLNLLDKGSSQVFQLSPPASFSLSQKFVLESFSKGSATWPEEKLPVSSSKAKTSLIHQSEYNFLKSSCKSTSSAHAWGMVIVTAGWDGRIKSFHNYGLPIPV 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02132 644 MobiDBLite consensus disorder prediction 68 96 - -
Viun9g02132 644 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 368 IPR001680 GO:0005515
Viun9g02132 644 Pfam WD domain, G-beta repeat 289 324 IPR001680 GO:0005515
Viun9g02132 644 Pfam WD domain, G-beta repeat 330 366 IPR001680 GO:0005515
Viun9g02132 644 Pfam WD domain, G-beta repeat 474 500 IPR001680 GO:0005515
Viun9g02132 644 Pfam WD domain, G-beta repeat 190 221 IPR001680 GO:0005515
Viun9g02132 644 SUPERFAMILY WD40 repeat-like 186 635 IPR036322 GO:0005515
Viun9g02132 644 Gene3D - 173 532 IPR015943 GO:0005515
Viun9g02132 644 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 223 - -
Viun9g02132 644 ProSiteProfiles Trp-Asp (WD) repeats profile. 479 509 IPR001680 GO:0005515
Viun9g02132 644 ProSitePatterns Trp-Asp (WD) repeats signature. 487 501 IPR019775 -
Viun9g02132 644 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 223 IPR001680 GO:0005515
Viun9g02132 644 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 328 - -
Viun9g02132 644 PANTHER WD REPEAT DOMAIN 44 69 641 IPR040324 -
Viun9g02132 644 PRINTS G protein beta WD-40 repeat signature 209 223 IPR020472 -
Viun9g02132 644 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Viun9g02132 644 PRINTS G protein beta WD-40 repeat signature 354 368 IPR020472 -
Viun9g02132 644 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 334 IPR001680 GO:0005515
Viun9g02132 644 SMART WD40_4 370 408 IPR001680 GO:0005515
Viun9g02132 644 SMART WD40_4 287 325 IPR001680 GO:0005515
Viun9g02132 644 SMART WD40_4 183 222 IPR001680 GO:0005515
Viun9g02132 644 SMART WD40_4 328 367 IPR001680 GO:0005515
Viun9g02132 644 SMART WD40_4 460 500 IPR001680 GO:0005515
Viun9g02132 644 SMART WD40_4 425 459 IPR001680 GO:0005515
Viun9g02132 644 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02132 Viun-Chr9 31054552 31059157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02132 190 382 U-box Gene Family AT2G33340 23.529 5.29e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02132 - - gmx:100807177 1067.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02132 9 31054552 31059157 Viun9g02132 9 31054552 31059157 ECH
Viun3g00870 3 5363382 5369000 Viun9g02132 9 31054552 31059157 PCT