Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02131 ATGGGTAGCTTCACTGAAGACGATGAATGTCGGTTTTTCGATGCTCAAGAGGATGTTTTTTCTATTGCAGATGATGAAGGGGTGTCCAATGCTTTCGATTATGGATTGTGGATTCGGAGTCCAAGGAGTGTTAGAGAGCGTAAGGGCAAGTTTATGAAGAGTATGGGACTGAGTAGCGTGGATTTGACTGCCCTAGAAAGTGAAAATTCAGTAGATGTGGATAGTGTTCTGTGTGAAGAAGGAAAGGATAGAGTTGAATTTACTAGTGGAGCTGTGACCCAAAATTGTGTTGTTGAAGAAGAATTCTGTTCAAGCCGGACATCAATGTCTTGTTTGCATAGGGAGGATTCTTCAGAGGAGCTTGGTTTGGTTGATAACTCGCCGGGTGGAGATGAGAATTTGGAGGGTAATGTGGATCAAGAGATGAGTGATGGAAGAGATCTGGATTCAGATCGATTGGTGGTTATGGCAGAGCCTAAGGATTCAGAGAATGGCTTTAGGGAAACGGATGCCAATGCTTCTGGTGGGAGGACAAGCCAGGTTAGAAAGGGTTGGTTCAGGAGACTGCGGTCAATATCATGCATGGTTAATAGTCACGGGGAAGGTGATTTTGGAAGAGAAGGCCTTGGTGAAATGCCAGGGTGTAGGCTTCCGAAAGTTAAGGTCCGTCAGTCAAAGAAGCCAATGAAGGAACTTTCAGCCCTTTACATGAGTCAAGATATCAAAGCTCATGAAGGTTCAATTTTGACCATGAAGTTCAGTCCTGATGGGCAGTATCTTGCTAGTGGTGGTGAAGATGGGGTTGTGCGCTTGTGGCAAGTGGTTGAGGATGATAGATGTAATGAAGTTGATATTCCAGAAATTGATCCATCTTGCATTTATTTCACCGTGAATAATCTCTCTGAATTGACACCACTATTTATTGATAAAGAAAAAATAAGCAAACTGAAGAGCCTGAAAAAAACATCAGATTCTGCTTGCGTAGTTATTCCTCCTAAGATCTTCCGGTTGTTGGAAAAACCATTGCATGAATTTCATGGGCATAGAGGTGAAGTTTTGGATCTCTCTTGGTCAAACAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGACTATGGCAAGTGAATAATGACCGTTGCTTGAAGGTTTTCTCACACAGTAATTATGTGACGTGTATACAATTCAATCCTGTGGATGATAACTATTTCATTAGTGGATCTATAGATGGAAAAGTGCGCATCTGGACAATTGCTGATTGTCACGTTGTTGATTGGATTAGTATCAAAGATATAGTGACTGCAGTATGTTATCGGCCTGATGGGAAGGGAGGGATCATTGGCTCCTTGGCTGGCAATTGTCGATTTTACAATGTATCAGAGAATCGCTTGCAATTAGATTCCCAAATATGCTTAATTGGTAAAAAGAAGCTTCTTGGCAGAGAGATTACTGGGTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTCTCGTGTGCTGATTCACAAGTCAGAATCTTAGACGGCCTTAATGTGATTGGCAAGTACAAAAGCCTTAGCACAGGGAGCCCAATATGTGCATCGTTTACTTCTGATGGGAAACATATTGTATCAGCATGTGAGGACTCTAACGTATACCTATGGAATGTTAGTGAGGAAGAGTCTAATCCTGTGAAAGCTAAGAAGATTACGTCTTGCGAGCGATTTTGCTCAAATGCATCTGTAGCAGTACCTTGGCATGGTTTGAAATCTAAAAATATTGAAAACGAGCATCAGTTGAATTTGTTGGATAAAGGATCATCTCAAGTTTTTCAGCTTAGTCCACCTGCATCCTTCTCTCTGAGCCAAAAGTTTGTTTTGGAGTCTTTTTCAAAGGGGTCTGCAACTTGGCCCGAGGAGAAGCTTCCTGTTTCAAGCTCCAAGGCTAAAACATCACTGATTCACCAATCTGAATACAATTTCTTGAAGTCTTCTTGCAAGAGTACCTCATCTGCTCATGCGTGGGGTATGGTCATTGTCACTGCTGGGTGGGATGGTAGGATAAAATCATTCCACAATTATGGGCTACCTATACCCGTTTGA 2088 0.4176 MGSFTEDDECRFFDAQEDVFSIADDEGVSNAFDYGLWIRSPRSVRERKGKFMKSMGLSSVDLTALESENSVDVDSVLCEEGKDRVEFTSGAVTQNCVVEEEFCSSRTSMSCLHREDSSEELGLVDNSPGGDENLEGNVDQEMSDGRDLDSDRLVVMAEPKDSENGFRETDANASGGRTSQVRKGWFRRLRSISCMVNSHGEGDFGREGLGEMPGCRLPKVKVRQSKKPMKELSALYMSQDIKAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEDDRCNEVDIPEIDPSCIYFTVNNLSELTPLFIDKEKISKLKSLKKTSDSACVVIPPKIFRLLEKPLHEFHGHRGEVLDLSWSNNNYLLSSSVDKTVRLWQVNNDRCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWTIADCHVVDWISIKDIVTAVCYRPDGKGGIIGSLAGNCRFYNVSENRLQLDSQICLIGKKKLLGREITGFQFLPQDSNKVMVSCADSQVRILDGLNVIGKYKSLSTGSPICASFTSDGKHIVSACEDSNVYLWNVSEEESNPVKAKKITSCERFCSNASVAVPWHGLKSKNIENEHQLNLLDKGSSQVFQLSPPASFSLSQKFVLESFSKGSATWPEEKLPVSSSKAKTSLIHQSEYNFLKSSCKSTSSAHAWGMVIVTAGWDGRIKSFHNYGLPIPV 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02131 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 419 IPR001680 GO:0005515
Viun9g02131 695 MobiDBLite consensus disorder prediction 158 177 - -
Viun9g02131 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 385 419 - -
Viun9g02131 695 PANTHER WD REPEAT DOMAIN 44 6 692 IPR040324 -
Viun9g02131 695 SUPERFAMILY WD40 repeat-like 237 686 IPR036322 GO:0005515
Viun9g02131 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 345 379 - -
Viun9g02131 695 Pfam WD domain, G-beta repeat 525 551 IPR001680 GO:0005515
Viun9g02131 695 Pfam WD domain, G-beta repeat 241 272 IPR001680 GO:0005515
Viun9g02131 695 Pfam WD domain, G-beta repeat 381 417 IPR001680 GO:0005515
Viun9g02131 695 Pfam WD domain, G-beta repeat 340 375 IPR001680 GO:0005515
Viun9g02131 695 Gene3D - 224 583 IPR015943 GO:0005515
Viun9g02131 695 MobiDBLite consensus disorder prediction 119 147 - -
Viun9g02131 695 SMART WD40_4 379 418 IPR001680 GO:0005515
Viun9g02131 695 SMART WD40_4 476 510 IPR001680 GO:0005515
Viun9g02131 695 SMART WD40_4 511 551 IPR001680 GO:0005515
Viun9g02131 695 SMART WD40_4 338 376 IPR001680 GO:0005515
Viun9g02131 695 SMART WD40_4 421 459 IPR001680 GO:0005515
Viun9g02131 695 SMART WD40_4 234 273 IPR001680 GO:0005515
Viun9g02131 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 560 IPR001680 GO:0005515
Viun9g02131 695 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 274 - -
Viun9g02131 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 274 IPR001680 GO:0005515
Viun9g02131 695 ProSiteProfiles Trp-Asp (WD) repeats profile. 345 385 IPR001680 GO:0005515
Viun9g02131 695 PRINTS G protein beta WD-40 repeat signature 405 419 IPR020472 -
Viun9g02131 695 PRINTS G protein beta WD-40 repeat signature 260 274 IPR020472 -
Viun9g02131 695 PRINTS G protein beta WD-40 repeat signature 363 377 IPR020472 -
Viun9g02131 695 ProSitePatterns Trp-Asp (WD) repeats signature. 538 552 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02131 Viun-Chr9 31054552 31059157 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02131 241 433 U-box Gene Family AT2G33340 23.529 8.52e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02131 - - gmx:100807177 1151.35