Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02130 ATGGAAGGTTCAAAGCCTCCTCCTATGTTGGAGAGAAGGGCGAGGCCCCAGAAGGATCAAGCTTTGAACTGCCCAAGGTGCAATTCCACCAACACCAAATTCTGCTACTACAATAACTATAGCCTCTCACAGCCAAGGTACTTTTGCAAAACATGTAGAAGGTATTGGACCGAGGGTGGTTCTCTCAGAAACGTTCCTGTGGGTGGTGGCTCTAGGAAGAACAAGAGATCAACCCCATCAGCTCCATCACCGGCATCAGCACCAACATCAAAGAAGCTTCCTGATCTCACACCACCAAATTTCCCTCAATCTGCTTCTCAGGACCCTAAGATCCACCAAGGCCAAGACCTTAACTTGGCATACCCTCCAGCCGAGGACTACAACACTGTGTCTAAGTTCATCGAGGTTCCTTACAGCACGGAATTAGACAAGGGTAGTCTTCAAAACGCCACTTCCTCATCAACACCGTCTCAGTTGTCTGCCATGGAGCTTCTCAAGACTGGGATTGCTTCCTCCAGGGGTTTAAACTCCTTCATGCCAATGTATAATTCAACTGGGTTTCCTTTGCCAGACTTCAAGCCACCACCTGGCCTTAACTTCAGTCTAGAGGGGTTTGAAAATGGTTACGGGGGTCTTCAGGGAATTCAAGAGGGTCCTACTGGTGCAAGGATCTTGTTTCCTGTGGAGGATTTGAAGCAGCAGGTTCCAACCACCAATGAGTTCGATCAGCAGAATAGGAGTCAAGGGGATTCATCTGGGTATTGGAATGGCATGTTAGGTGGAGGATCGTGGTAG 795 0.4868 MEGSKPPPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSAPSPASAPTSKKLPDLTPPNFPQSASQDPKIHQGQDLNLAYPPAEDYNTVSKFIEVPYSTELDKGSLQNATSSSTPSQLSAMELLKTGIASSRGLNSFMPMYNSTGFPLPDFKPPPGLNFSLEGFENGYGGLQGIQEGPTGARILFPVEDLKQQVPTTNEFDQQNRSQGDSSGYWNGMLGGGSW 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02130 264 MobiDBLite consensus disorder prediction 238 264 - -
Viun9g02130 264 MobiDBLite consensus disorder prediction 71 87 - -
Viun9g02130 264 MobiDBLite consensus disorder prediction 238 254 - -
Viun9g02130 264 ProSitePatterns Zinc finger Dof-type signature. 24 60 IPR003851 GO:0003677|GO:0006355
Viun9g02130 264 MobiDBLite consensus disorder prediction 61 111 - -
Viun9g02130 264 Pfam Dof domain, zinc finger 19 76 IPR003851 GO:0003677|GO:0006355
Viun9g02130 264 MobiDBLite consensus disorder prediction 1 23 - -
Viun9g02130 264 MobiDBLite consensus disorder prediction 96 111 - -
Viun9g02130 264 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 154 IPR045174 GO:0003700|GO:0006355
Viun9g02130 264 MobiDBLite consensus disorder prediction 1 19 - -
Viun9g02130 264 ProSiteProfiles Zinc finger Dof-type profile. 22 76 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02130 Viun-Chr9 31016985 31018619 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02130 9 264 C2C2-Dof Transcription Factor Family AT3G61850 45.196 1.76e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun9g02130 zf-Dof 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02130 - - gmx:778114 455.677