Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02093 ATGGGAGGTTCATCGGAGACGAAGTTCCTGCAAGACCTGTTGTTGTACGCTGCGAGCGCGGCGTTGAGTTGCTTGGTGTTGTTCGCGGGACTCAGACACCTCGATCCTAATCGCGAAGCTTCCAAGAAGGTTCTTGAGCACAAGAAAGAGATTGCAAAGCGTCTCGGTCGCCCCCTCATTCAGACTAACCCTTATGAGGATGTTATAGCCTGTGATGTTATAAATCCTGACCACATTGATGTGGAGTTCAATTCTATTGGGGGACTGGAAACAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCAGATTTGTTTTCACATGGTAAGCTTCTTGGACCACAAAAGGGGGTTCTGTTGTATGGACCCCCTGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCTAAGGAGTCGGGAGCAGTTTTTATCAATGTGAGGATATCAAACCTTATGAGCAAGTGGTTTGGAGATGCCCAAAAGCTTGTGGCTGCTGTATTTAGCCTGGCTTATAAGCTTCAGCCTGCCATCATTTTCATTGATGAAGTAGACAGTTTTTTGGGTCAACGCCGTACAACAGATCATGAGGCTTTGTTAAACATGAAAACTGAGTTCATGGCTCTGTGGGACGGGTTTACTACAGATCAGAATGCTCGAGTTATGGTTCTTGCAGCGACAAACCGTCCTTCAGAACTTGATGAAGCAATACTACGGCGTCTTCCTCAAGCCTTTGAAATCGGAATTCCCGACCAAAGGGAGAGGACTGAAATATTGAAGGTTATCTTAAAGGGTGAGAGGGTTGAAGACAACATAGAGTTTGGTCATATAGCGGACTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACGATCTCCTGCACCTAGACCTTTGTCCCAGTTAGATTTGGAGAAGGCCCTTGCCACTTCACAGAAGACAAAGGTTGCTGCAAGTGAATACGCTGGATTCAGCCTTCAGTCACCTTCAAGATGGTCGGTGCCTGGTGAGTCAGACTAA 1092 0.4551 MGGSSETKFLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKVLEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHIDVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESGAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRTTDHEALLNMKTEFMALWDGFTTDQNARVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERTEILKVILKGERVEDNIEFGHIADLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKRSPAPRPLSQLDLEKALATSQKTKVAASEYAGFSLQSPSRWSVPGESD 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02093 363 Pfam AAA+ lid domain 275 310 IPR041569 -
Viun9g02093 363 Gene3D - 253 335 - -
Viun9g02093 363 CDD RecA-like_ATAD1 85 250 - -
Viun9g02093 363 Gene3D - 80 338 IPR027417 -
Viun9g02093 363 SMART AAA_5 118 254 IPR003593 GO:0016887
Viun9g02093 363 FunFam ATPase family AAA domain-containing protein 1 80 257 - -
Viun9g02093 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 310 IPR027417 -
Viun9g02093 363 Pfam ATPase family associated with various cellular activities (AAA) 122 251 IPR003959 GO:0005524|GO:0016887
Viun9g02093 363 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 44 344 - -
Viun9g02093 363 ProSitePatterns AAA-protein family signature. 224 243 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02093 Viun-Chr9 30787570 30795292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02093 39 318 Calmodulin-binding Proteins AT3G56690 32.394 1.06e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02093 K22530 - gmx:100796908 684.1