Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02059 ATGATGATCTACGTTCCCTTTCTCTTGCTCTCTTGTTTCCTATTTCATCATTTTCATGCCATTCTATGTGACAGTAACACAGACAGAGAAGCCCTTCTTTCTTTCAAATCCCAAGTCACAGACCCTAAAAATGCTCTCTCTGCCTGGTCCACAAACTCTAATCACTGCAACTGGTACGGTGTCAGATGCTCCAAAGTTGGAAACAGGGTCCAATCTCTGAATCTACCAGGACTTTCCCTCTCTGGCAAACTGCCCCCTCACCTTTCCAACCTCACTTTCCTACACTCACTTGACCTTTCCAACAACACTTTTCATGGCCAAATTCCCCAATCATTTGGCAATCTTTCTTCTCTAGAGGTTCTTTCCTTGGCAAGGAACGCTTTGGAGGGTGAGATTCCAACTGAACTTGGTAATCTCCGCAATCTTTCCTTTCTTCAAATCTCAGTAAACAATTTCTCTGGCAACTTTCCCACTTCTATCTTCAACATCTCTTCCTTAGTCTATTTATTCATGACACGAAACAAGCTTACAGGTGAGTTACCACAAAATTTTGGCCTTCTTCTTCGAAATTTAAAGAGTCTATACCTGGCAACCAATATGTTCGAAGGGGTAATTCCAAATTCCATATCCAATGCCTCACATCTTCAAGAGATTGACCTTTCTAACAATAAATTTACTGGACCCATACCTCTATTCTACAACTTAAACCTTACCCGCTTCGCTCTTGGTAATAATTTTTTCTCTTCCACAACCTCGTTAAATTTTCAGTTCTTTAATTCCCTTAGAAACTCCACCCAGTTACAAATTGTCATGATCAATGATAACCTTTTGGCTGGGGAGCTTCCCAGCTCTGTTGCTAATCTTTCCCGGAATCTCGAAGATTTCTGTGTAGCTAATAATTTTCTTACTGGTACCATTCCTCGAGGAATGAAGAAATTCCAAAATCTCATATCCTTGTCTTTTGAAAACAATTCTTTCACTGGAGAGTTATCATCAGAAATAGGAGCACTAAATACTCTACAGCGACTTGCGATACACAGCAACAGATTGTCTGGGGACATTCCAGATATTTTTGGCAATCTCACAAATCTCTTTATCCTTACAATGGGAAATAACCAACTCTCGGGTAGAATTCACCAAAGTATCGGGCAATGCAAGAGATTATCTTTTCTTGACTTGAGCATGAATAGACTTGGTGGGACCGTATCAAATGAGATTTTTCAACTATCTAGCTTGAGAATGTTGAATTTAGCAGGAAACTCTCTCCAGGGTCCGTTACCTCCTATGGTGGGAAACATGGAACAGCTTGAGACCTTGTATATTTCTGACAACCAGCTGTCAGGGAACATTCCTGAGAAAATAGGGGAGTGTTTAACCTTGAAGTCGCTAAAGATGGCAAGAAACAAATTCAATGGTTCGATCCCAACAAATATTGGGAATTTATCATCCCTTGAGACTTTGGATTTATCATTAAACAGTCTCACTGGTCCTATTCCTCAAAGTTTAGAAAAGCTCGAGTATATGCAGAAATTAAATTTGTCTTTCAACCATTTGGAAGGGGAGGTTCCTACGAAAGGTCTTTTTACGAACCTTACCAAGTTTGATCTTCGAGGTAACAACCAACTCTGTAGCCTTAGCAAGGAAATTGTACAAAATTTGGGAGTACTTCCGTGTGTTGTTGGCAAGAAGAAAAGAAAATTCTTACTCCCTACCATGTTTGCAGTAGTTGGTGCTACTGCTTTGTTCATTTCAGTGCTCTTTCTGTTTTGGACAATGAAGAAGAAAAGAAAGGAGAGGAAAACCCTTGTGTCATCTGACCCTTTCATGGGGTTGTCCAAAAATATAACTTACGGTGATATTCGGATAGCTACAAACAATTTTGCAGCTGAAAACTTAATTGGAAAAGGAGGTTTTGGCTCTGTGTACAAGGGTGTTTTCAGCTTCAGCACTGGTGAAACCGTGACCCTTGCCGTCAAAGTCCTGGACCTGCAACAAAGCAAAGCGTCTAAGAGTTTCAACGCGGAATGTGAAGCTTTGAAAAATGTTAGGCATCGGAACCTGGTGAAGGTTATCACCTCTTGCTCCAGCCTTGATTATAAAGGCGAGGAATTTAAGGCCATTGTCATGCAATTCATGCCCAATGGAAACTTGGACTTCAAAATACACCCAGGAGATGAAGACTCAGGATCCCTTCTAAACTTGATGCAAAGATTGAGCATTGCAATTGATGTTGCTTCTGCTTTGGAGTACTTGCATCATGACTGCGATCCACCAATAGCACATTGTGATCTGAAACCTGCCAATGTCCTTCTAGATGAAAATATGACTGCACATGTTGTAGATTTTGGATTGGCAAGATTTTTGTGTCAAAACACATCAGAGAAGCAGAGTAGCACTCTAGGACTGAAAGGATCAATTGGCTACATAGCACCAGAATATGGTTTTGGAAGCAAGGCTTCAACTGAGGGCGATGCGTACAGTTTTGGGATCCTACTGCTAGAGATGTTCACAGCCAAAAGACCAAGCGATGAAATGTTCAAAGAAGGGTTAAGCCTCAACAAATTTGTCTCAAGCATGGATGAGAATGAAGTAGTGAAGGTTGCAGATCGAAGGCTCATTGAGGATTATGAATGTTCAACACAAAGCTCAAACAGTGATGATGGTAGCAGTGGCTTTGACAGCAACACACATTGGATGCATAAAGCTGAAGAGTGCATCGGTGATGTGTTGAGAGTTGGTCTGAGTTGCGCAGCTGATCAACCCAAAGAACGATGGAATATGAGAGAGGCCTTATCAAAATTGCATGCTATTAAGCACTCTATGCTCGCTTTCTGA 2835 0.4106 MMIYVPFLLLSCFLFHHFHAILCDSNTDREALLSFKSQVTDPKNALSAWSTNSNHCNWYGVRCSKVGNRVQSLNLPGLSLSGKLPPHLSNLTFLHSLDLSNNTFHGQIPQSFGNLSSLEVLSLARNALEGEIPTELGNLRNLSFLQISVNNFSGNFPTSIFNISSLVYLFMTRNKLTGELPQNFGLLLRNLKSLYLATNMFEGVIPNSISNASHLQEIDLSNNKFTGPIPLFYNLNLTRFALGNNFFSSTTSLNFQFFNSLRNSTQLQIVMINDNLLAGELPSSVANLSRNLEDFCVANNFLTGTIPRGMKKFQNLISLSFENNSFTGELSSEIGALNTLQRLAIHSNRLSGDIPDIFGNLTNLFILTMGNNQLSGRIHQSIGQCKRLSFLDLSMNRLGGTVSNEIFQLSSLRMLNLAGNSLQGPLPPMVGNMEQLETLYISDNQLSGNIPEKIGECLTLKSLKMARNKFNGSIPTNIGNLSSLETLDLSLNSLTGPIPQSLEKLEYMQKLNLSFNHLEGEVPTKGLFTNLTKFDLRGNNQLCSLSKEIVQNLGVLPCVVGKKKRKFLLPTMFAVVGATALFISVLFLFWTMKKKRKERKTLVSSDPFMGLSKNITYGDIRIATNNFAAENLIGKGGFGSVYKGVFSFSTGETVTLAVKVLDLQQSKASKSFNAECEALKNVRHRNLVKVITSCSSLDYKGEEFKAIVMQFMPNGNLDFKIHPGDEDSGSLLNLMQRLSIAIDVASALEYLHHDCDPPIAHCDLKPANVLLDENMTAHVVDFGLARFLCQNTSEKQSSTLGLKGSIGYIAPEYGFGSKASTEGDAYSFGILLLEMFTAKRPSDEMFKEGLSLNKFVSSMDENEVVKVADRRLIEDYECSTQSSNSDDGSSGFDSNTHWMHKAEECIGDVLRVGLSCAADQPKERWNMREALSKLHAIKHSMLAF 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02059 944 PRINTS Leucine-rich repeat signature 481 494 - -
Viun9g02059 944 PRINTS Leucine-rich repeat signature 388 401 - -
Viun9g02059 944 Pfam Protein tyrosine and serine/threonine kinase 630 848 IPR001245 GO:0004672|GO:0006468
Viun9g02059 944 SMART LRR_typ_2 433 457 IPR003591 -
Viun9g02059 944 SMART LRR_typ_2 361 385 IPR003591 -
Viun9g02059 944 SMART LRR_typ_2 115 139 IPR003591 -
Viun9g02059 944 SMART LRR_typ_2 188 211 IPR003591 -
Viun9g02059 944 SMART LRR_typ_2 91 114 IPR003591 -
Viun9g02059 944 SMART LRR_typ_2 481 505 IPR003591 -
Viun9g02059 944 SMART LRR_typ_2 409 432 IPR003591 -
Viun9g02059 944 SUPERFAMILY RNI-like 72 399 - -
Viun9g02059 944 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 186 - -
Viun9g02059 944 SMART serkin_6 627 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02059 944 Pfam Leucine rich repeat 339 398 IPR001611 GO:0005515
Viun9g02059 944 Pfam Leucine rich repeat 460 518 IPR001611 GO:0005515
Viun9g02059 944 Pfam Leucine rich repeat 94 151 IPR001611 GO:0005515
Viun9g02059 944 Gene3D Ribonuclease Inhibitor 186 234 IPR032675 -
Viun9g02059 944 Gene3D Phosphorylase Kinase; domain 1 610 711 - -
Viun9g02059 944 Gene3D Transferase(Phosphotransferase) domain 1 712 942 - -
Viun9g02059 944 ProSitePatterns Serine/Threonine protein kinases active-site signature. 759 771 IPR008271 GO:0004672|GO:0006468
Viun9g02059 944 PANTHER RECEPTOR-LIKE PROTEIN 55 314 938 - -
Viun9g02059 944 FunFam LRR receptor-like serine/threonine-protein kinase EFR 598 711 - -
Viun9g02059 944 Gene3D Ribonuclease Inhibitor 24 185 IPR032675 -
Viun9g02059 944 SUPERFAMILY Protein kinase-like (PK-like) 602 934 IPR011009 -
Viun9g02059 944 FunFam LRR receptor-like serine/threonine-protein kinase EFR 253 564 - -
Viun9g02059 944 ProSitePatterns Protein kinases ATP-binding region signature. 633 659 IPR017441 GO:0005524
Viun9g02059 944 Gene3D Ribonuclease Inhibitor 235 551 IPR032675 -
Viun9g02059 944 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Viun9g02059 944 ProSiteProfiles Protein kinase domain profile. 627 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02059 944 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 712 943 - -
Viun9g02059 944 SUPERFAMILY L domain-like 291 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02059 Viun-Chr9 30489197 30492488 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02059 68 939 Receptor kinase-like Gene Family AT3G47570 40.791 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Viun9g02059 PK_Tyr_Ser-Thr 4.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02059 - - gmx:100776054 1334.32