Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02053 ATGTCACAGCCAAGGCAAAACAAGATGATGAGTCCAAACCTTGGAAAACAAGTTGGCGACACAACATATACTAAGATCTTTGTCGGAGGATTGGCCTGGGAGACCAAAAGAGACTCTCTCAAACGCTATTTTGATCAGTTTGGGGAGATCTTAGAGGCGGTTGTCATCACCGATAGAGTCACCGGAAGATCAAAAGGATACGGCTTTGTCACCTTCAGGGACCCGAATTCTGCAGCAAGGGCTTGTCTCAATCCCTATCCTGTGATTGATGGAAGGAGAGCTAATTGTAACCTTGCAGCCCTTGGTGCCCAGAAATTTGATCCATCCACAACAGGAAGACAAAAATTCAGTAGCCCTTCATGGAATATGGCACCAGTCCCATTGCAAGGCACCTCCACTTATTACAATCAACACATACCTCACTACCCGTTTCCCTATCCAACCTACAGGTATCCTGGTTTTACTCACCCACAAGATTTGTATGAAATGAACTACAATCAAGCATATGGTGGACAGCAGTTTCCCCTCCGCTGGTATCCAGCGTATTGCCAACCCTTTTATGGCCTTGGCAGACAGATTATTCCAACAACCTATGTGAAAAAGGTCATACCAGACACGTCTCCTCAGGATGTCACAGTTGTTGGTTTTTCAGAACCTGTTGCAGCTTCTCCCTCAATTCCCACCACTGGATTAGTCACTGGAACAGTACCTGCCACAGGAGTGGTAGAATCCCCTCAAGAACAGACATCTTCAACTACTTAA 762 0.4593 MSQPRQNKMMSPNLGKQVGDTTYTKIFVGGLAWETKRDSLKRYFDQFGEILEAVVITDRVTGRSKGYGFVTFRDPNSAARACLNPYPVIDGRRANCNLAALGAQKFDPSTTGRQKFSSPSWNMAPVPLQGTSTYYNQHIPHYPFPYPTYRYPGFTHPQDLYEMNYNQAYGGQQFPLRWYPAYCQPFYGLGRQIIPTTYVKKVIPDTSPQDVTVVGFSEPVAASPSIPTTGLVTGTVPATGVVESPQEQTSSTT 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02053 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 101 IPR000504 GO:0003723
Viun9g02053 253 SMART rrm1_1 25 97 IPR000504 GO:0003723
Viun9g02053 253 SUPERFAMILY RNA-binding domain, RBD 10 99 IPR035979 GO:0003676
Viun9g02053 253 Gene3D - 1 114 IPR012677 -
Viun9g02053 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 81 IPR000504 GO:0003723
Viun9g02053 253 CDD RRM_RBM24_RBM38_like 24 99 - -
Viun9g02053 253 PANTHER BOULE-RELATED 9 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02053 Viun-Chr9 30411509 30413637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02053 8 100 C2H2 Transcription Factor Family AT2G19380 38.710 1.18e-14 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02053 - - gmx:100788634 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02053 9 30411509 30413637 Viun9g02053 9 30411509 30413637 ECH