Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02051 ATGGCCGTTCCTGAGAATGTCGGGGCCAAAATCGGTTCTTCCAGTCAAAATTTGGACAACAGTGTAGTGTCATCGGACTCGGGCGAGGTTGAACAATCGAAACCCCGAAGCGGGTCCATCAACGGCGATCAGAAGCTGAACAACGGCGTGTTCAACCACCAAGATAGAGTTCCTAGCACTATGTCAGTGCCCAATGGCAATTATAACTACAAGACTCAAATGGGTCAGATGCATGCAAATGGGGTGAGCAATGATGGATATGGGATGGATGAGGAGAATGGGGGTGAGAGTTTCAAGCGGGACATGAGGGATTTGGAAGAGCTTTTGTCAAAGTTGAATCCCATGGCTGAGGAATTTGTGCCCCATTCACTAACCAATACTCTTGGCTACCTGCCTGGACCTGGTGCCGGTACCGGTACCGGGTTTGGTTACCCTAATAATTTTATTCTGCTCAATGGTTATGGTAATGCTAACGGGCAAACTAACAGAAGGAGGAAGAATGGTTATAATAATGGAAAGCGGAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAGGAGATGATTAAGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTCACTGAAGAGCAATTGGCAGCACTGTTTCTTAACTGTGGCCAGGTTGTTGATTGCCGTGTTTGCGGAGATCCTAATTCTATTCTTCGGTTTGCCTTCATCGAGTTTACAGATGAAGAAGGTGCAAGAGCTGCTTTGAGCCTATCGGGAACCATGCTCGGGTATTACCCTTTGCGAGTTCTGCCTTCAAAAACTGCTATTGCACCTGTTAACCCGACATTTTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGTTCAAGAACAATTTATTGCACAAATATTGACAAGAAGCTTACTCAAGCCGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGGTTGAGGCTCCTTGGGGATTACCATCATTCAACTCGAATTGCTTTTGTTGAGTTCACTCTGGCTGAGAGTGCAATTGCTGCGCTAAGCTGTAGTGGTGTGATTCTTGGTTCATTGCCCATAAGGGTAAGTCCATCGAAGACACCAGTTCGATCGCGTGCTCCTCGTCCTTCCATGCACTGA 1131 0.4598 MAVPENVGAKIGSSSQNLDNSVVSSDSGEVEQSKPRSGSINGDQKLNNGVFNHQDRVPSTMSVPNGNYNYKTQMGQMHANGVSNDGYGMDEENGGESFKRDMRDLEELLSKLNPMAEEFVPHSLTNTLGYLPGPGAGTGTGFGYPNNFILLNGYGNANGQTNRRRKNGYNNGKRRVNHKMDMEKREEMIKRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTLAESAIAALSCSGVILGSLPIRVSPSKTPVRSRAPRPSMH 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02051 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 357 IPR000504 GO:0003723
Viun9g02051 376 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 256 IPR000504 GO:0003723
Viun9g02051 376 SMART rrm1_1 289 360 IPR000504 GO:0003723
Viun9g02051 376 SMART rrm1_1 192 262 IPR000504 GO:0003723
Viun9g02051 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 364 IPR000504 GO:0003723
Viun9g02051 376 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 107 369 - -
Viun9g02051 376 MobiDBLite consensus disorder prediction 1 61 - -
Viun9g02051 376 CDD RRM2_CID8_like 284 365 IPR034825 -
Viun9g02051 376 Pfam Ataxin-2 C-terminal region 109 122 IPR009818 -
Viun9g02051 376 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 266 IPR000504 GO:0003723
Viun9g02051 376 Gene3D - 275 370 IPR012677 -
Viun9g02051 376 Gene3D - 152 268 IPR012677 -
Viun9g02051 376 MobiDBLite consensus disorder prediction 9 61 - -
Viun9g02051 376 FunFam Polyadenylate-binding protein-interacting protein 10 282 360 - -
Viun9g02051 376 FunFam Polyadenylate-binding protein-interacting protein 11 154 268 - -
Viun9g02051 376 SUPERFAMILY RNA-binding domain, RBD 166 267 IPR035979 GO:0003676
Viun9g02051 376 CDD RRM1_CID8_like 189 268 IPR034823 -
Viun9g02051 376 SUPERFAMILY RNA-binding domain, RBD 279 370 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02051 Viun-Chr9 30393205 30398168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02051 193 359 Eukaryotic Initiation Factors Gene Family AT1G34140 24.561 6.61e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02051 - - gmx:100788102 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02051 9 30393205 30398168 Viun9g02051 9 30393205 30398168 ECH