Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02049 ATGGCGGTTGCTGAGAATGTTGGGGCCAAAATCGGTTCTTCGAGTCAGAGTTTGGACAGCGGTGTAGTGTCTGCGGATTCGAGTGAGGTCGAGAAATCGAAAACTCGAAGCGATCAGAATCTGACCAACGGTGTGTTTACCCATCAACAGCATCCAGAGAGAGTTCCCAGCTCTATGACAGTTCCTAATGGAAATTACAGCTACAATACTCAGATGCACGGAAATGGGGTGAACAACGATGGGTATGGGATGAATGGGGTTATGAGTGGGGAGAATGGGGGTGACAGTTTCAAGCGTGACATGAGGGATTTGGAAGAGCTTTTATCAAAGCTGAACCCCATGGCCGAGGAATTTGTGCCCCCATCACTAACCAATACTCATGGCTTTTTAGCTGGACCTAATACTGGGTTTGGTTACACTAACAATTTTATGCTGCCTAATAACTTTGGCAGTGCTAATGGACAAATTAACAATAGAAGGAGGAAGAATGGCTATAATCCTGGGAAGCGAAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCGGAGGACCGTTTATGTGTCTGACATTGATCAACTGGTTACTGAAGAGCAGCTGGCTGCTCTCTTTCTCAACTGTGGCCAGGTTGTTGATTGCCGCGTATGTGGAGATCCTAATTCTATTCTTCGATTTGCCTTTATTGAGTTTACAGATGAAGATGGAGCAAGGGCTGCCTTGAGCCTGTCTGGTACCATGCTTGGATATTACCCGCTGAGAGTGCTGCCTTCAAAAACTGCCATTGCACCTGTGAATCCAACATTTTTGCCTAGGTCTGAAGATGAAAGGGAAATGTGCTCAAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTCAAACACTTCTTTGAATCTATTTGTGGAGAGGTTCAACGCTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCATTTGTTGAGTTTGCACTGGCTGAGAGTGCAATTGCTGCACTGAGCTGTAGTGGTGTTATTTTGGGTTCACTGCCTATAAGGGTAAGTCCGTCAAAGACACCTGTCCGTCCTCGCGCTCCCCGATCCTCCATCCACTGA 1119 0.454 MAVAENVGAKIGSSSQSLDSGVVSADSSEVEKSKTRSDQNLTNGVFTHQQHPERVPSSMTVPNGNYSYNTQMHGNGVNNDGYGMNGVMSGENGGDSFKRDMRDLEELLSKLNPMAEEFVPPSLTNTHGFLAGPNTGFGYTNNFMLPNNFGSANGQINNRRRKNGYNPGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEDGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFALAESAIAALSCSGVILGSLPIRVSPSKTPVRPRAPRSSIH 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02049 372 MobiDBLite consensus disorder prediction 9 28 - -
Viun9g02049 372 Gene3D - 271 367 IPR012677 -
Viun9g02049 372 Gene3D - 149 264 IPR012677 -
Viun9g02049 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 360 IPR000504 GO:0003723
Viun9g02049 372 Pfam Ataxin-2 C-terminal region 108 122 IPR009818 -
Viun9g02049 372 CDD RRM2_CID8_like 280 361 IPR034825 -
Viun9g02049 372 SUPERFAMILY RNA-binding domain, RBD 275 366 IPR035979 GO:0003676
Viun9g02049 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 262 IPR000504 GO:0003723
Viun9g02049 372 FunFam Polyadenylate-binding protein-interacting protein 10 278 356 - -
Viun9g02049 372 FunFam Polyadenylate-binding protein-interacting protein 11 152 264 - -
Viun9g02049 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 353 IPR000504 GO:0003723
Viun9g02049 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 252 IPR000504 GO:0003723
Viun9g02049 372 SUPERFAMILY RNA-binding domain, RBD 156 263 IPR035979 GO:0003676
Viun9g02049 372 MobiDBLite consensus disorder prediction 1 43 - -
Viun9g02049 372 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 106 365 - -
Viun9g02049 372 CDD RRM1_CID8_like 185 264 IPR034823 -
Viun9g02049 372 SMART rrm1_1 188 258 IPR000504 GO:0003723
Viun9g02049 372 SMART rrm1_1 285 356 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02049 Viun-Chr9 30375771 30381356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02049 186 355 Eukaryotic Initiation Factors Gene Family AT1G34140 24.713 3.87e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02049 - - gmx:100787572 678.322