Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02047 ATGAGTGGCCGGTTTTCTCGCACAATTTATGTCGGAAACCTGCCTTCTGACATAAGAGAGTCAGAAATTGAAGATCTCTTCTACAAGTATGGTCGTATAATGGATATTGAATTGAAGATTCCTCCCCGCCCTCCATGTTATTGTTTTGTTGAGTTTGATAATGCTCGAGATGCTGAAGATGCAATTCGAGGTAGAGATGGATACAACTTTGACGGTTGTCGGTTAAGGGTGGAGCTTGCTCATGGAGGTAGAGGGCCATCGTCAAGTGATCGACGGGGATATGGAGGAAGTGGTGGGGGTGGAGGAGCTGGTGGCGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGGGATGTTTGTTTTGCTGAGGTTTCTCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGGAAACTGGATGACACCGAGTTTAGAAATCCTTGGGCACGAGCCTATATTCGGGTGAGAAAGTATGAGGGCAGTCGTTCTAGGAGCCGCAGCAGAAGCCCCAGCAGGAGTAGAAGTCCGAAAAGGGCCAGAAGTAGATCCGTGGAGCGTTCTGTGTCTAGGTCACGATCCAGATCACGATCAGCATCACCCATCAAATCTTCAAGGCCAAGATCACGCTCACGGTCTGGATCTCCTCGCCAGGTGCTGTCAGGTAGTGGATGA 774 0.4793 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGSGGGGGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYEGSRSRSRSRSPSRSRSPKRARSRSVERSVSRSRSRSRSASPIKSSRPRSRSRSGSPRQVLSGSG 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02047 257 MobiDBLite consensus disorder prediction 227 257 - -
Viun9g02047 257 CDD RRM2_SF2_plant_like 116 191 - -
Viun9g02047 257 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 249 - -
Viun9g02047 257 FunFam serine/arginine-rich splicing factor SR34A-like 116 193 - -
Viun9g02047 257 Gene3D - 116 193 IPR012677 -
Viun9g02047 257 SUPERFAMILY RNA-binding domain, RBD 6 186 IPR035979 GO:0003676
Viun9g02047 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Viun9g02047 257 MobiDBLite consensus disorder prediction 212 226 - -
Viun9g02047 257 FunFam serine/arginine-rich splicing factor SR34A-like 2 115 - -
Viun9g02047 257 MobiDBLite consensus disorder prediction 81 105 - -
Viun9g02047 257 MobiDBLite consensus disorder prediction 193 257 - -
Viun9g02047 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Viun9g02047 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 180 IPR000504 GO:0003723
Viun9g02047 257 Gene3D - 2 115 IPR012677 -
Viun9g02047 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Viun9g02047 257 SMART rrm1_1 117 186 IPR000504 GO:0003723
Viun9g02047 257 SMART rrm1_1 8 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02047 Viun-Chr9 30355322 30361096 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02047 6 174 Eukaryotic Initiation Factors Gene Family AT4G34110 26.286 5.08e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02047 K12890 - gmx:100800653 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02047 9 30355322 30361096 Viun9g02047 9 30355322 30361096 ECH