LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g02044	ATGGCTGCCATGGATACTGGTGTTCAGGGCTGCATCTTATCCGTTTTAATTCTTCACGATGAGGAAATCGCAGTTACCGCCGAGAAGATCTTCGCTTTGTTGAAGGCTGCCAATGTCTCCGTTGAGTCTTACTGGCCAAGTCTCTTCGCCAAGCTCGCTCAGAATAAGAACATTGAAGACCTCATCTTGAACGCCGGTTCAGGCGGAGGTGCCGCCGTTGCCGTGGCTGCTCCCGCCGCAGGTGGTGCTGGTGCCGCTGCTGCAGCACCTGCTGCCGAGGAAAAGAAGGAAGAAGTGAAGGAAGAAAGTGATGACGACATGGGATTCGGTTTGTTTGATTAG	342	0.5292	MAAMDTGVQGCILSVLILHDEEIAVTAEKIFALLKAANVSVESYWPSLFAKLAQNKNIEDLILNAGSGGGAAVAVAAPAAGGAGAAAAAPAAEEKKEEVKEESDDDMGFGLFD	113

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g02044	113	MobiDBLite	consensus disorder prediction	91	107	-	-
	Viun9g02044	113	FunFam	60S acidic ribosomal protein P1	3	66	-	-
	Viun9g02044	113	PANTHER	60S ACIDIC RIBOSOMAL PROTEIN P1	4	113	-	-
	Viun9g02044	113	MobiDBLite	consensus disorder prediction	87	113	-	-
	Viun9g02044	113	Hamap	50S ribosomal protein L12 [rpl12].	9	113	IPR027534	GO:0003735\|GO:0005840\|GO:0006414
	Viun9g02044	113	CDD	Ribosomal_P1	9	112	-	-
	Viun9g02044	113	Gene3D	-	6	66	IPR038716	-
	Viun9g02044	113	PRINTS	Ribosomal protein P2 signature	85	99	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Viun9g02044	113	PRINTS	Ribosomal protein P2 signature	100	111	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Viun9g02044	113	PRINTS	Ribosomal protein P2 signature	28	39	IPR001859	GO:0003735\|GO:0005840\|GO:0006412
	Viun9g02044	113	Pfam	60s Acidic ribosomal protein	25	112	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g02044	Viun-Chr9	30312305	30313741	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun9g02044	4	113	Cytoplasmic Ribosomal Protein Gene Family	AT5G24510	53.097	2.04e-34	113

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g02044	K02942		-	gmx:100801741	136.732