Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02037 ATGGGCGAGGTGGTGATGAGTGGAGAGAAGTCAGTGAGAGTGGAGAAGGAAGAGAGTGGGAGTGGGAGTAAGGGTGAATTGAAGGGCTTGATGAGGTGGGAGAAGTTTCTTCCAAGGATGATTTTGAGGGTCTTATTGGTTGAAGCCGATGACTCAACAAGGCAGATTATAGCTGCGCTTCTCAGAAAATGCAGCTACAAAGTGGCTGCTGTTCCTGATGGATTGAAGGCGTGGGAATTACTCAAGGGAAGACCGGGCAATGTTGATCTAATACTGACGGAGGTGGATTTGCCATCCATATCTGGCTATGCACTTCTTACCTTAATTATGGAGCATGATATTTGCAAAAACATCCCTGTCATAATGATGTCTTCCCAAGATTCAATTAGCACGGTATACAAATGCATGCTGAGGGGTGCTGCAGATTATCTTGTTAAGCCAATAAGAAAAAATGAACTGAGAAATTTGTGGCAACATGTTTGGAGAAGACAATCATCAGCCACTGGCATAAATGGTCCCCAAGATGAGAGTGTTGCACAGCAGAAGGTCGAAGCCACTGCTGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGCGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACTAAGCCTGACTTGGAAGCTGAGAGTGGGCCTGTTGATAACATGCAGGAATTTTCTCCGCTGAAATGTGGGGAAGAATATCCAAGTGGAGCCGAGACACAAGAGGTTGAAACATGCATTCGTTTAGGACAGACGTTGGTGATGAATGGCAGTCATGCTGGAGGATTAACTATGCACAGAAATGGTGAAGCAAGCACAACTAATGACAAGGATGCTGATCCGGAGCATTTGGGGAATGCTAGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATTAACTCTTCTAAGGAAGCTATTGACTTGATTGGAGCGTTTCATACTCATCCCAACTGCACGGTAAAAAGTCCCACAGTTGATAGCACAAGCAAGGTTGACTTTTCTCCTCAATTAGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTTTGAGAATGAACTCACTGAAGAAAGGCATACCCTGATGCATTCGAATGCTTCAGCCTTCAAGCGGTATACTAACAGGCAATTGCAAGTATTGACGCCTACAGCGTTAGTTAACTTGTCTGACCATCAAAGAGATCACAGTGCAAATGGTGAGAAAAGCATCTCACACATTGTTAATGGCTGCAACTCCGATAGTTCAGCACCAGGTATGCAAAGATGTATCGTGTCTCCAACTACAGTCCAATCAAAAGAGTCTGAAGTTGCAACCTCACACTCTCAGCAAGGGCATTCTCTCCCAATTCCAGTAAAGGGTGTAAGGTTCAATGATCTATGCACAGCCTATCGTTCTGTACTTCCTTCAATGTTTAGTACACAGTCAGGTCCACAAGCAATGCCAAGTCCAAGTTCAGTTGTGCTCCTTGAACCAAACTTTCAGAATGCATTTTATCAGTCAAACATTAAAGAGAGTAGTTCAGAGCAGCTTTATCAACCTCTTGGTCCAAATGGGAACAGTTCCCAGAACCACATTGTGTACACACAGGAACACAAACCAGAACATGCGGAGGATCGAAGGCATTTCTCTCCTACAACTGATCAAAGTGTGTCAAGTAGTTTCTGTAATGGCAATGCAAGCCATCTTAACAGCATCGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGCCGATCAAGTTACCGTTGTCAGGGTAGCTTCAGAGAGCAAGAATGAGGACCTCACAAACAATGTAAACAATCATCGATCCATCCAAAGAGAAGCAGCACTAAACAAATTCCGGTTGAAAAGAAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCAAGAGTGAAAGGACAGTTTGTTCGTCAAGTTCATCCTGATTCTCTTGTTGCAGAACAAGATGGTAAAGAATATGATCATTCACAGATTTCTGACTCACTGGAGAGGAGAGCATGA 2073 0.4375 MGEVVMSGEKSVRVEKEESGSGSKGELKGLMRWEKFLPRMILRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWELLKGRPGNVDLILTEVDLPSISGYALLTLIMEHDICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSATGINGPQDESVAQQKVEATAENNAASNRSSGDAACIQRNMELIEKGSDAQSSCTKPDLEAESGPVDNMQEFSPLKCGEEYPSGAETQEVETCIRLGQTLVMNGSHAGGLTMHRNGEASTTNDKDADPEHLGNASISGEAHDNHYVQINSSKEAIDLIGAFHTHPNCTVKSPTVDSTSKVDFSPQLDLSLRRSRPSSFENELTEERHTLMHSNASAFKRYTNRQLQVLTPTALVNLSDHQRDHSANGEKSISHIVNGCNSDSSAPGMQRCIVSPTTVQSKESEVATSHSQQGHSLPIPVKGVRFNDLCTAYRSVLPSMFSTQSGPQAMPSPSSVVLLEPNFQNAFYQSNIKESSSEQLYQPLGPNGNSSQNHIVYTQEHKPEHAEDRRHFSPTTDQSVSSSFCNGNASHLNSIGYGSNCGSSSNADQVTVVRVASESKNEDLTNNVNNHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDSLVAEQDGKEYDHSQISDSLERRA 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02037 690 ProSiteProfiles CCT domain profile. 620 662 IPR010402 GO:0005515
Viun9g02037 690 MobiDBLite consensus disorder prediction 9 25 - -
Viun9g02037 690 MobiDBLite consensus disorder prediction 643 659 - -
Viun9g02037 690 SMART REC_2 42 157 IPR001789 GO:0000160
Viun9g02037 690 PANTHER TWO-COMPONENT RESPONSE REGULATOR 43 219 IPR045279 GO:0009736
Viun9g02037 690 Gene3D - 40 242 - -
Viun9g02037 690 MobiDBLite consensus disorder prediction 668 690 - -
Viun9g02037 690 MobiDBLite consensus disorder prediction 274 294 - -
Viun9g02037 690 Pfam CCT motif 620 662 IPR010402 GO:0005515
Viun9g02037 690 ProSiteProfiles Response regulatory domain profile. 43 161 IPR001789 GO:0000160
Viun9g02037 690 MobiDBLite consensus disorder prediction 214 234 - -
Viun9g02037 690 CDD psREC_PRR 44 147 - -
Viun9g02037 690 MobiDBLite consensus disorder prediction 643 690 - -
Viun9g02037 690 MobiDBLite consensus disorder prediction 1 25 - -
Viun9g02037 690 SUPERFAMILY CheY-like 42 166 IPR011006 -
Viun9g02037 690 MobiDBLite consensus disorder prediction 167 198 - -
Viun9g02037 690 Pfam Response regulator receiver domain 44 155 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02037 Viun-Chr9 30220733 30225800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02037 319 664 Response Regulator Gene Family AT5G24470 25.141 1.05e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Viun9g02037 Response_reg 3.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02037 K12130 - gmx:100777119 1127.08