Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02019 ATGAGTTCCGTCGAGTGTTATCCGTCGCGAGGCGACGATGTCGCCGTCGTGTCGCTGGATTCTCTACCGTTAGGGTTCCGATTCAGACCTACCGACGAGGAACTCATCGATTACTACCTGCGGCAGAAGATTAACGGCAATGGTGCCGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAATGGGAGCCGTGGGACATGCCTGATTTGTCGGTGATACGGAACAAGGATCCGGAATGGTTCTTCTTCTGTCCACAGGACAGAAAGTACCCAAATGGGCATCGATTGAACAGAGCAACAAGTCATGGATATTGGAAGGCGACTGGGAAAGATCGTAAAATAAAGTCTGGGATGATTTTGATTGGAATGAAGAAGACTTTGGTGTTCTACACTGGTCGTGCACCCAAAGGGAAGAGGACCAATTGGGTTATGCACGAGTATCGCCCCACCTTGAAGGAGCTCGATGGCACCAATCCTGGACAGAATGCATATGTCCTTTGTCGCTTGTTTAAGAAACATGACGAAAGCCTTGAAGTTTCGCACTGTGATGAGGCAGAACAGACTCCGTCAACTCCGATTGCTGCCAATTACTCTACGGAGGAAATACAGTCGGGTCTGGCTGTTGTTGCAGTATCCCCATCACTTGTTACAGGGGATGATAAGCACCAGAAAATTGTCCCTACGCACTCTGAGGAAGCAATATCCAACGTTATAACTCCGGTTGATTGCCATAGTGATGGATATGAAGCTTCTGATGCACAAAATAAATATTTGGCACCAGCTGCAGAGGAGTTTCAGCCTTGGAACGTTGATATGTGTTACGACCTAAAAAACGAGCTATTGGATGATAAGTTATTCTCCCCTGAACTTGCACATGTTCAACCAGAATTTCATTATCAACCAAACAGAGAATCAGATAGTCGGTATGGGCTTCAATATGGCACTAATGAGACGAACATTTCAGACTTTTTGAATTCGGTGGTTAACTGGGACGAACTACCCTATGAGGAGCCCAATTGCCAACAGTGGACCTACCCCTCGTTTAATGTTCAGAATGGCGCATTAGGCAGCGATATAGATTCTGAACTTGCCAATATAAAATATATGCAAGCTGGTTACGCTGAGGAGGCAAACGACAGAAAGATTCCTTTGGTGATAGCTCCAGAATTTTGCAGCACCACTGGCATCCCCATTAGCCGTGGTGGTGATGAGCAGAAGAGCAATGTTGAGTTATTTCAAAGCATTTCCCAGAGAGATTTTACCGATGCCAATATGGGCCAAGTATACAATATTGTCAATGATTATCAGCAACCCAGAATCTATAATTCAGTTCCTAGTGGGGATACTGGAATCATTAGGAGGACACGAGTGGTTCAAAACGAAAAGCTAAGTGCAAACGTAACACAAGGTACAGCGCATAGGAGAATTCGTTTGGCGCAGAAGGCGCGAAATGAACTCTCAAATAAGATAGTGAAAAAAGAGCTTGATTTGAAACCAATCATTGCTGTGGAGGAGAAAGGTTCAGAAAACCATGCTTCGGAGGAAAGTGCTACGCTTACTAATGATGGGAATGAACTGCAGAAGACAGCAGAGGCAAATGGCACTAGAAAGATTTCTCGTCAAGTTACAAAAGCAAGTTCTACCTTGGGGTTGAAAGATTTTTTATTGCTCAGAAGGGTGCCATACATTTCAAAGGCTACTTCCAATCCTACCAAGTGCTCTTCTATTTTTGTAGTTTCTGCCTTTGTAATGGTCTCATTAGTGGTCTTTACTGACATCTGCGGATATCTTAAATTCTAA 1800 0.4439 MSSVECYPSRGDDVAVVSLDSLPLGFRFRPTDEELIDYYLRQKINGNGAEVWVIREIDVCKWEPWDMPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATSHGYWKATGKDRKIKSGMILIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNAYVLCRLFKKHDESLEVSHCDEAEQTPSTPIAANYSTEEIQSGLAVVAVSPSLVTGDDKHQKIVPTHSEEAISNVITPVDCHSDGYEASDAQNKYLAPAAEEFQPWNVDMCYDLKNELLDDKLFSPELAHVQPEFHYQPNRESDSRYGLQYGTNETNISDFLNSVVNWDELPYEEPNCQQWTYPSFNVQNGALGSDIDSELANIKYMQAGYAEEANDRKIPLVIAPEFCSTTGIPISRGGDEQKSNVELFQSISQRDFTDANMGQVYNIVNDYQQPRIYNSVPSGDTGIIRRTRVVQNEKLSANVTQGTAHRRIRLAQKARNELSNKIVKKELDLKPIIAVEEKGSENHASEESATLTNDGNELQKTAEANGTRKISRQVTKASSTLGLKDFLLLRRVPYISKATSNPTKCSSIFVVSAFVMVSLVVFTDICGYLKF 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02019 599 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
Viun9g02019 599 FunFam Nac domain-containing protein 86 31 175 - -
Viun9g02019 599 Coils Coil 476 496 - -
Viun9g02019 599 MobiDBLite consensus disorder prediction 506 539 - -
Viun9g02019 599 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Viun9g02019 599 MobiDBLite consensus disorder prediction 513 539 - -
Viun9g02019 599 SUPERFAMILY NAC domain 18 172 IPR036093 GO:0003677|GO:0006355
Viun9g02019 599 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Viun9g02019 599 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02019 Viun-Chr9 30033650 30037216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02019 8 515 NAC Transcription Factor Family AT1G33060 37.774 7.13e-91 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun9g02019 NAM 3.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02019 - - gmx:100777071 944.11