Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01982 ATGGAGACTCTGAAAGCAGCTATTCCAGAAAGCCTGAAGCGAGCGATAGGGGATAGCAATGCCGATGATCTTCAAAGCACGTGCTCTTCTCTTCATCGCTTCTTTCTCCACTTCGACCCATTTCACCAGATTATCGCTCAACTGGCTAATCCAAAGTATGGTCTGTGCGGTAAGAATAAGGAAGATGCCTTGAAATCCAAGCAGCTTGGTAATGAATGCTTCTCCAACGCAGATTATGCCAAGGCCTTGGAATGCTATACTCAGGCATTGCGCAAGGCTCCATTAGATACCGGTGATATGAAAAGTAATCTTGTTGCAACATTATATATCAATCGGGCTACTGTATTGCATAAAATGAGTCTTTTAGTAGAATGCTTGCGGGATTGCACTCGAGCTCTTCAAATTTTTCCAAGCTACTCAAAGGCATGGTACAGGAGAGGTAAGGCAAATGCTTCATTGGGAAATTATAGAAATGCAATTTGCGACCTAAATGTGGCCAAGATTGTGGAACCTTCAATGGGTGGGAAGAGACAAATAGAAGGTGAACTGAAAATTCTTTTAGACCAATGCAAAAGCACAAGTGCGATAGTACAGATACAACGTAAGGAGAACAACTGCAATACTGTGGGTGAGATGCCTCAAATAAAGCTACAGTGTATCTCCATCCCTGATAAAGGAAGAGGCATGGTCTCATCATGTGTCATTTCACCAGGTTCTTTAGTTCATTCCGAAGAACCTTATGCTATGATAATTTTAAAGCAATGTCGGGAAACCCATTGCCATTATTGCTTGAATGATCTACCTGCTGATAGAGTTCCTTGTTTATCATGTTCAATACCATTGTATTGTTCCTACCAATGCCAGATCCGAGCAGGTGGGCAAATGTTCAGGATTTACCCAGAAGAAAATGTCACTTTTAAAAAAATGCCCAGTGATCTTGGGGAATATGCTTCTGAAGTTATCCAAAGCAATGATTCTGAACAAGAAATTGAGGATATTACTGAACATAAACATGAATGCCGAGGTGTACATTGGCCTGTGGTACTGCCATCTGAGATAGTTTTGGCTGGCCGAATACTAGCAAGGTTTTTGCTGAATAGCACATCTGATAATATTATAAACTTTGTGGAAAGGCTGGAGCTTTCTCATCGTTACAAACATATGTCATCCGAAAGCAAATTGGATTCACATATATATGCCATTGTATTGTTATATTGTCTTCAACACTCTTGTGGAACTATGTTTTCCATAGACGGAGTCTCCATATCACAGGTTGTCATAATTATCTCTCAAATTAAAGTGAATTGCATGACTATTGTTCGTTTAAAATCAATAGATGCTCCTGGACTATCAGGCCATTTTGGAGAATTTCCATTTAAATCTGATGCACATTCAACTAGTAATGTGGAACAGGTCAGAGTGGGTAAAGCTATCTACAAAGCTGCCAGTTTATTTAACCATTCTTGCCGACCGAATGCTCATGCATATTTTCTTTCACGCACTCTTTACCTACGAACCACACATGGTGTAACAGCTGGTTGTCAGCTTGAACTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGCAAAGATCGCCTCAACTTTCTCAAAGACGAATATGCGTTTCACTGTCAGTGTATTGGTTGTTCAGTAGTCAATGTATCTGACATAGTCCTCAATGCCTTCCATTGTGTCAATCAAAATTGTTCTGGCGCAGTGTTAGAGAGCAGAGTAATTGACTGTGAGCAGCAGAAAATCAAGCACTTCACTATTACTGACCGTGTTGAAAAGAATGATGACATTTGTGAAGTATGTCTTAATGTCTTCAAACAAAACGGGGCCCATATTCATGGTCAACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGTCTTCACATGCTGCAGTCAATGAAGCTGTAATATGCATAAAAAGGTTGCAGGATGCAATATCTTCAAAAGAAATTTCGAGTATTACTATTTCTGATGCTTTGATATCTCTTCAATCACTAAGATTAAATTTGCATGCTTACAACAAGCTTATTGCAGAGGCAGAAGACAGCATTGCTCAGGCTTTTTGTTTAGTAGGAGAACTACAACTATCTGTTGATCATTGCAAAGCTTCTATCCAGATTCTGGAAAAGCTATACGATACTGATGATATTGTTATTGCTTACGAACTTGTGAAGCTTTCTTCCATCCAACTTTCCTTGGATGATTCTACAGCTATGGAAAGCATAAATCGAATAGATGATATCTTCTCACGTTATTATGGAACTCATGCAGACTTGGTGTTCCCATATCTTCAATATCTTAGGAGTGAAATCAAGAAATTTTCAGTGAAGGCTATCCAATAA 2364 0.3947 METLKAAIPESLKRAIGDSNADDLQSTCSSLHRFFLHFDPFHQIIAQLANPKYGLCGKNKEDALKSKQLGNECFSNADYAKALECYTQALRKAPLDTGDMKSNLVATLYINRATVLHKMSLLVECLRDCTRALQIFPSYSKAWYRRGKANASLGNYRNAICDLNVAKIVEPSMGGKRQIEGELKILLDQCKSTSAIVQIQRKENNCNTVGEMPQIKLQCISIPDKGRGMVSSCVISPGSLVHSEEPYAMIILKQCRETHCHYCLNDLPADRVPCLSCSIPLYCSYQCQIRAGGQMFRIYPEENVTFKKMPSDLGEYASEVIQSNDSEQEIEDITEHKHECRGVHWPVVLPSEIVLAGRILARFLLNSTSDNIINFVERLELSHRYKHMSSESKLDSHIYAIVLLYCLQHSCGTMFSIDGVSISQVVIIISQIKVNCMTIVRLKSIDAPGLSGHFGEFPFKSDAHSTSNVEQVRVGKAIYKAASLFNHSCRPNAHAYFLSRTLYLRTTHGVTAGCQLELSYGPQVGLWDCKDRLNFLKDEYAFHCQCIGCSVVNVSDIVLNAFHCVNQNCSGAVLESRVIDCEQQKIKHFTITDRVEKNDDICEVCLNVFKQNGAHIHGQPGYCLKCGSYCDLESSHAAVNEAVICIKRLQDAISSKEISSITISDALISLQSLRLNLHAYNKLIAEAEDSIAQAFCLVGELQLSVDHCKASIQILEKLYDTDDIVIAYELVKLSSIQLSLDDSTAMESINRIDDIFSRYYGTHADLVFPYLQYLRSEIKKFSVKAIQ 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01982 787 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 780 - -
Viun9g01982 787 ProSiteProfiles SET domain profile. 213 521 IPR001214 GO:0005515
Viun9g01982 787 SUPERFAMILY TPR-like 58 189 IPR011990 GO:0005515
Viun9g01982 787 Coils Coil 670 690 - -
Viun9g01982 787 Pfam SET domain 226 521 IPR001214 GO:0005515
Viun9g01982 787 Gene3D SET domain 382 520 IPR046341 -
Viun9g01982 787 Gene3D Tetratricopeptide repeat domain 45 203 IPR011990 GO:0005515
Viun9g01982 787 SUPERFAMILY SET domain 219 546 IPR046341 -
Viun9g01982 787 Gene3D Tetratricopeptide repeat domain 529 785 IPR011990 GO:0005515
Viun9g01982 787 SMART tpr_5 63 96 IPR019734 GO:0005515
Viun9g01982 787 SMART tpr_5 106 139 IPR019734 GO:0005515
Viun9g01982 787 SMART tpr_5 685 718 IPR019734 GO:0005515
Viun9g01982 787 SMART tpr_5 140 173 IPR019734 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun9g01982 SET 6.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01982 K24634 - gmx:100783548 1352.81