Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01962 ATGGAGTCGTCGCCGTCGTCTTCGTCTTCGTCCTCGTTGTCGTCGTCTTCTGGAAGCGATGCCGGCGGTGGGGGCGCTGTCACGTGGTTCGGGATGAGTTTCCCGTTCCGTTCTCCGCTCTCTCTCGTGATGGATTACTGCACGCGCGAGGATTCCGCAGAGCCTGTGATTATCATTCCCCGGACGCGCCCGCGGTTTCAGGCGCCGGCTGAATCTGCTGCTTCTGCTTCGGCCTCTGACTCTGGCGATAATGCTTGCGGCGGCGCTGAGGAGGTTGCGATACGCATCATTGGGGCCGGCGAGCAAGAGAGCGGTTCGTCGCCGTCGTCGTCGCGGAGCCGCGCTGGGGAACCTGGATGTGAGGAGGCGGCGGTAGTTGGGAGGAGCGGGATGCTGTCGTCGGAAGCTCGCCGGCGAATGGCTGAGGAGAGGGTGCCGTTGGTGTCTTTGGATGATGGTATTGGTGGCGGTAGGGATTCTTCTTCGTCTTCCTCTACCTACCAGAGGTATGATATTCAGCAGGTTGCTAAGTGGATTGAACAGATTCTTCCGTTCTCCCTCTTGCTGTTGATTGTTTTCATCCGCCAGCATTTGCAAGGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTATGCTGCATGTTATATGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCACTGGCCATGCTTCCACCAAAGACAACTCCACCTTTCTGGCATACAATATTCATCATTTTGGTTAACGATACATTGGTGCGGCAAGCAGCAATGGCTTTGAAGTGTTTATTGCTCATTTACTACAAAAATGGAAGAGGCCATAACTTTCGTCGGCAGGGTCAAATGTTAACTCTGATTGAGTACACTCTTCTGCTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAAGATTATGGAAGTCTGTTTTCCTCACTGACCACAGGATTGTATTTAACTTTCAAGCTAACATCAGTAGTTGAGAAGGTCCAATGCTTTGTTTCTGCCTTAAAAGCATTATCGAAAAAGGAAGTTCATTACGGGGTTTATGCTACAACAGAACAGGTGAGTGCCGCTGGTGACATGTGTGCTATATGTCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGGTTTGAGAGAGAACGGACTTGCCCATTATGCAGGGCTTTGGTAAAACCAGCTGATCTTCGGACTTTCGGAGATGGATCAACAAGTCTGTTTTTTCAGCTGTTTTAA 1386 0.4892 MESSPSSSSSSSLSSSSGSDAGGGGAVTWFGMSFPFRSPLSLVMDYCTREDSAEPVIIIPRTRPRFQAPAESAASASASDSGDNACGGAEEVAIRIIGAGEQESGSSPSSSRSRAGEPGCEEAAVVGRSGMLSSEARRRMAEERVPLVSLDDGIGGGRDSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKVSVLLGISFAFMLHVICIYWWYRNDDLLYPLAMLPPKTTPPFWHTIFIILVNDTLVRQAAMALKCLLLIYYKNGRGHNFRRQGQMLTLIEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVYATTEQVSAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 461
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01962 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 448 IPR013083 -
Viun9g01962 461 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 71 461 IPR044235 GO:0061630|GO:1904294
Viun9g01962 461 MobiDBLite consensus disorder prediction 1 22 - -
Viun9g01962 461 Pfam Zinc finger, C3HC4 type (RING finger) 398 441 - -
Viun9g01962 461 ProSiteProfiles Zinc finger RING-type profile. 400 438 IPR001841 -
Viun9g01962 461 SMART ring_2 400 437 IPR001841 -
Viun9g01962 461 CDD RING-HC_RNFT1-like 398 438 - -
Viun9g01962 461 ProSitePatterns Zinc finger RING-type signature. 415 424 IPR017907 -
Viun9g01962 461 MobiDBLite consensus disorder prediction 99 121 - -
Viun9g01962 461 MobiDBLite consensus disorder prediction 1 24 - -
Viun9g01962 461 SUPERFAMILY RING/U-box 390 443 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun9g01962 Viun-Chr9 29485806 29493604 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01962 61 461 C3H Transcription Factor Family AT5G01960 67.082 0.0 555
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01962 - K22379 gmx:100784614 764.992