Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01944 ATGGAGAAGGAACTGGTGGAATTGTATGACGCCGCCAAGAAGGCGGCGGATGCGGCCCTCTCCGGCGACGCTGAGCACGAGGAGAGCCGATGCATCGATGCCCTGGAACAGCTTAAGAAATTTCCGGTTAATTATAAGATTCTTGTTAACACTCAGGTAGGCAAACATCTTAAAGTTCTCACAAAGCACCCAAGGCAGACAATTCGGGCTTTTGCTGTTGACCTAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAAAACGGGGGTGTTGATAGTAAGGTTGAATCAGCTAATGGGGAGAGATCTAAACCTGGGAAAATGCAGAAGAGTGCTTCAGTGAAAGTTGAAAAAAGTGAAACTGTCAAGGCTGAGAGAAATGATAGAAATGGTACATCAAAGTCAGAAAGTATGAGAAAGGCACAGAATGATGTCAAGATTGAGAAAACTGATCGTGCTGCAAGTGTCAAGGTGGAAAAGTCAGCCAAGGAGGTAAAGCCATTTTCTGGAACAAAGAAATTTTCATCCAGTTCTGCAACTCCCCCAAAGCTAGCAACTATGATCAAATGTAATGATGCAACGCGAGACAAAATAAGGGAACTTCTCCATGAGGCTTTGTCCAAGGTCTCTGGAGAGGCTGATGAAGATCTTGTAGAGATTGTCAATGCTACTGATCCTATTCGAGTTGCTGTGACAGTGGAGTCTGTATTATTTGAAAAATGGGGTCCTTCAAATGGAGCGCAGAAGGTCAAGTACAGGTCCTTAATGTTTAACCTTAAGGATTCAAATAACCCTGATTTCCGGAGAAAAGTTCTGCTTGGTGTTGTTGAGCCTGAGCAACTGATCAACATGAGCTCGTCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAAAATCAGAAAATCACTGAGAAAGCTTTGTTTGAATGTGAACGTGGAATGCAACCAAAAGCTACAACCGATCAATTTAAGTGTGGCCGATGTGGTCAAAGAAAGTGCACCTATTACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTGTTGTCTGCAATAACCGTTGGAAGTTCTGTTAG 1101 0.4305 MEKELVELYDAAKKAADAALSGDAEHEESRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPRQTIRAFAVDLIEIWKGIIIKETSKNKNGGVDSKVESANGERSKPGKMQKSASVKVEKSETVKAERNDRNGTSKSESMRKAQNDVKIEKTDRAASVKVEKSAKEVKPFSGTKKFSSSSATPPKLATMIKCNDATRDKIRELLHEALSKVSGEADEDLVEIVNATDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVVEPEQLINMSSSEMASEQRKQENQKITEKALFECERGMQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVVCNNRWKFC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01944 366 SMART TFS2_5 8 85 IPR003617 GO:0005634
Viun9g01944 366 Pfam Transcription factor S-II (TFIIS), central domain 195 312 IPR003618 GO:0006351
Viun9g01944 366 SMART mid_6 196 304 IPR003618 GO:0006351
Viun9g01944 366 MobiDBLite consensus disorder prediction 90 156 - -
Viun9g01944 366 CDD TFIIS_I 23 83 - -
Viun9g01944 366 Gene3D - 176 294 IPR036575 GO:0006351
Viun9g01944 366 SMART Cys4_2 326 365 IPR001222 GO:0003676|GO:0006351|GO:0008270
Viun9g01944 366 NCBIfam transcription elongation factor S-II 14 366 IPR006289 GO:0003676|GO:0005634|GO:0006368
Viun9g01944 366 Gene3D - 295 366 - -
Viun9g01944 366 SUPERFAMILY Elongation factor TFIIS domain 2 182 296 IPR036575 GO:0006351
Viun9g01944 366 ProSiteProfiles TFIIS central domain profile. 198 321 IPR003618 GO:0006351
Viun9g01944 366 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
Viun9g01944 366 PIRSF TFIIS 2 366 IPR035100 -
Viun9g01944 366 CDD Zn-ribbon_TFIIS 319 365 - -
Viun9g01944 366 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 24 94 IPR035441 -
Viun9g01944 366 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 15 366 - -
Viun9g01944 366 ProSiteProfiles Zinc finger TFIIS-type profile. 324 364 IPR001222 GO:0003676|GO:0006351|GO:0008270
Viun9g01944 366 FunFam Probable Transcription elongation factor S-II 295 366 - -
Viun9g01944 366 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 96 IPR035441 -
Viun9g01944 366 MobiDBLite consensus disorder prediction 115 156 - -
Viun9g01944 366 ProSitePatterns Zinc finger TFIIS-type signature. 328 363 IPR001222 GO:0003676|GO:0006351|GO:0008270
Viun9g01944 366 ProSiteProfiles TFIIS N-terminal domain profile. 1 86 IPR017923 -
Viun9g01944 366 Pfam Transcription factor S-II (TFIIS) 326 364 IPR001222 GO:0003676|GO:0006351|GO:0008270
Viun9g01944 366 SUPERFAMILY Zinc beta-ribbon 306 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01944 Viun-Chr9 29362314 29366191 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Viun9g01944 TFIIS_M 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01944 K03145 - gmx:100811982 626.706