Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01942 ATGGGTGTAGCACTCAATCCCATTGGCCTAGACGCCCCTTCCAAGCTCTTTTTCACTTCAAAAGGTGACAACCTCAAAAGGAAAGAGCAATATTGTTATAGTGTGTTAATATTTCAATTTTTCTTCTCAAACAAATTTAGTTTTGCAAAACAATCAAAGATAAACGGTTTGAAAATGAATGTTATTGATCGATGTTGGAGACCAAACCCTAAATGGATGAGACATCGATCTCAATTGGCCACATGTTCTGTAGGCTATGCTGGCAAGATGATAAATAACATCGGTAATGACCTTATTTATTATAAAGTTACGGACTCTAGTGATGATCCTATAAACCCCAAACCCAACACCTTGAGATATGGAACTTCTATTATTCAAGGTAAAGTGTGGATCACATTTCAAAAAGACATGATTATCACATTAGAGAAACCTCTTCTCATTAGTAGTTTTACCACTATTGATGGTCGAGGTGTTAATGTCGACATTGCTAATAATGCATGTCTAATGATCTTTAAGGCCACGAACATAATCATTCATAACATTCGAGTTCATCATTGTAAACCTCAAGCCCCTGGGATTGTAATGGGACCTAAAGGAAAGGTAATCCCTTTAGGTCATGTAGACGGAGATGCAATAAGATTGGTTACTGCTTCAAAGATCTGGATTGACCATAATACATTGTATGATTGTCAAGATGGTTTGCTAGATGTAACACGAGGTTCTACTGATGTGACTATATCCAATAATTGGTTCAAAAACCAAGATAAAGTTATGCTTCTTGGACATGATGATGGATATGTGAGAGACAAGAATATGAAGGTTACAGTAGTGTACAACCATTTTGGACCTAATTGCAATCAACGTATGCCAAGGATTCGTCATGGATATGCACATGTTGCCAACAATCTTTATCAAGGATGGCTTCAATATGCTATTGGTGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAATCTCTTTGTAGCACCAACAATAGGAAATAAGGAGGTGACTTGGAGAAAGAAAAATGATACAAATGAAGATAGATGGGATTTTCATTCGGTAAGGGACATTTTTGAAAATGAAGCATCGTTCACTATAACAAGAGGAGGAAGTGTGAAAAAACCGAATTATAGCAAGGAACAAAATTTTAAAGTTGTAGATGCCAAATTTGTAAGATCGTTGATACGTTCATCGGGTGTGTTACGATACAATAAAAATTCTATATATTGA 1233 0.3617 MGVALNPIGLDAPSKLFFTSKGDNLKRKEQYCYSVLIFQFFFSNKFSFAKQSKINGLKMNVIDRCWRPNPKWMRHRSQLATCSVGYAGKMINNIGNDLIYYKVTDSSDDPINPKPNTLRYGTSIIQGKVWITFQKDMIITLEKPLLISSFTTIDGRGVNVDIANNACLMIFKATNIIIHNIRVHHCKPQAPGIVMGPKGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKKNDTNEDRWDFHSVRDIFENEASFTITRGGSVKKPNYSKEQNFKVVDAKFVRSLIRSSGVLRYNKNSIY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01942 410 PANTHER PECTATE LYASE 18-RELATED 56 407 IPR045032 GO:0030570
Viun9g01942 410 SMART amb_all 136 333 IPR002022 -
Viun9g01942 410 SUPERFAMILY Pectin lyase-like 53 392 IPR011050 -
Viun9g01942 410 Pfam Pectate lyase 147 327 IPR002022 -
Viun9g01942 410 Gene3D - 59 403 IPR012334 -
Viun9g01942 410 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Viun9g01942 410 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Viun9g01942 410 PRINTS Pollen allergen Amb family signature 288 307 IPR018082 -
Viun9g01942 410 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Viun9g01942 410 PRINTS Pollen allergen Amb family signature 208 229 IPR018082 -
Viun9g01942 410 PRINTS Pollen allergen Amb family signature 144 160 IPR018082 -
Viun9g01942 410 PRINTS Pollen allergen Amb family signature 381 404 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01942 Viun-Chr9 29334320 29337966 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01942 90 337 Polysaccharide Lyase AT5G09280 70.968 1.02e-138 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01942 K01728 - gmx:100780437 642.884