Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01939 ATGGAAGAGGTAATTAACTCCATTCGACGCGCTTCTGAATTGGTTCAAAAGCTTGAACAAGACCTACCCAACTTGGCGAACCAACCAGGGACGCTGTCCCTGTCCATTGATCAGATAACTGAGGCTTTCACAGCTGCCAAGGAAAAGCTGTTGCTGATTTCCCGACACACCCAAACCTCGGAATCTCCTCCAATGTTGCTTCATGAAACGACACCCCAGCAGCCTCAGATGGATGCTACTCTAATGCAGGAGTGGTTAAGGTCTAGTCATGCACTAACCATTGATCAGTTGTTTCAAATGCAACGTGCTGCTGCAATGGGAGGGAGAGAGGTCGAAGATTCAGAGAGAACCATTGGATCTGAAGGAGATCAAGCCCAAGGAATCCACGCATCTTCTTCACGACCACGAAGAAGAAGCAGGGAAGCAAATCAAGAGAAGAAGAAAATTCTGGTTCCTGCCCCACAGTTTGGGAACACAGAGATGCCACCGGAGGATGGTTTCACTTGGAGGAAATATGGGCAGAAAGAAATACTTGGATCCAAATACCCGAGGAGTTACTACAGATGCACACATCAGAAGTTATATGAATGCCAAGCCAAGAAGATGGTGCAAAGACTTGATCATAATGCTGACATATTTGAGGTAACATACAGAGGGAAACACACATGCCACATGTCCTCCACAGCACCATCGTCGGTTCCTCCAGAACATATTTTGGTGGACATGACACAAAATAGTAACGCCATTTCCTCTCAGTTGTCTCCGTCAGTGAATCTCAGCCTCCATCCCGCTAGTGCCGGCGCCGCCACCACTAGTGGCAGGGGCGGTGCCTCCGCCTCAAGATACGGTGGTGATTATCCCGTGGTGGATATGGCTGATGCTATGTTCAACTCTGGTAGCAGCAGCGGCAACAACAGCATGGAATTTCTCTTCTCTCCCACCGAAGATAAAACTGATGCAAATTGA 966 0.4824 MEEVINSIRRASELVQKLEQDLPNLANQPGTLSLSIDQITEAFTAAKEKLLLISRHTQTSESPPMLLHETTPQQPQMDATLMQEWLRSSHALTIDQLFQMQRAAAMGGREVEDSERTIGSEGDQAQGIHASSSRPRRRSREANQEKKKILVPAPQFGNTEMPPEDGFTWRKYGQKEILGSKYPRSYYRCTHQKLYECQAKKMVQRLDHNADIFEVTYRGKHTCHMSSTAPSSVPPEHILVDMTQNSNAISSQLSPSVNLSLHPASAGAATTSGRGGASASRYGGDYPVVDMADAMFNSGSSSGNNSMEFLFSPTEDKTDAN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01939 321 SMART WRKY_cls 163 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g01939 321 SUPERFAMILY WRKY DNA-binding domain 160 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun9g01939 321 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 8 236 IPR044810 GO:0003700
Viun9g01939 321 Pfam WRKY DNA -binding domain 164 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g01939 321 Coils Coil 1 28 - -
Viun9g01939 321 Gene3D WRKY domain 153 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun9g01939 321 ProSiteProfiles WRKY domain profile. 164 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun9g01939 321 MobiDBLite consensus disorder prediction 105 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01939 Viun-Chr9 29314001 29316661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01939 1 316 WRKY Transcription Factor Family AT2G40740 40.123 4.20e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun9g01939 WRKY 2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01939 - - pvu:PHAVU_009G043200g 540.036