Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01934 ATGCGAGCGTTGTTTTCGAGCATGAGAGGTTTTCTTTTTCTTGTGTGGTTGTTGGAGGTGGTTTTTGTGGCGGTGACGGCGGTGAACCCCTCTCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAAGCTGACATACGAGATCCGAAGGGGAAGCTTGCGTCTTGGAGTGAGGACGATGAGAGTGCGTGTGGGGGTGGTTGGGTTGGGGTGAAGTGCAACCCTAGATCCAACAGAGTGGTGGAGGTTAACCTTGATGGGTTTTCTCTATCTGGGAGAATAGGTCGAGGGTTGCAAAGGTTGCAGTTTCTAAGGAAGCTTTCTCTGGCGAACAACAACCTCACTGGGGGAATAAACTCCAACATTGCACGAATAGATAGCCTTAGGGTCATTGACTTGAGTGGCAACAGTCTCTCAGGGGAGGTGTCTGAGGATGTTTTCCGACAATGTGGGTCTCTCAGGGCTGTTTCCTTGGCCAGGAACAGGTTTTCTGGGTCCATTCCCTCTACTTTGGGGGAGTGTTCTGCTCTTGCTGCTATTGACCTTTCTAATAACCAGTTTTCTGGTTCTGTCCCCTCTGGGATTTGGTCTTTGAGTGCCCTTAGGTCCCTGGATTTGTCTGATAACTTGTTGGAGGGAGAGATTTCTAAGGGGGTTGAGGCCATGAAGAATTTAAGGAGTGTTAGCTTGGCTAGGAATCGGTTGACTGGGAATGTTCCTGCTGGGTTTGGGAGCTGTTCGCTTTTGAGGTCCATTGATTTGGGGAATAATTCATTTTCTGGCAGTATTCCTGGTGATTTCAAGGAACTTACGCTGTGTGGTTACCTTAGTTTACGAGGGAATGCTTTTTCTGGAGAGCTTCCTGAGTGGATTGGGGAGATGAGAGGTCTTGAGACGTTGGACCTTTCAAACAATGCACTTACTGGTCGGATTCCAAACTCTGTTGGAAATCTTCAGTCATTGAAGATGTTGAATTTTTCTGGGAATGGTATCACTGGTAGTCTGCCTGAGTCTATGGTTAATTGCACGAAACTTTTGGTGTTGGATGTCAGCCGAAATTCGATGTCCGGGGGGCTTCCATTGTGGATTTTCAAGTCAGATTTGGGCAAGGTTTTGCTGTCGGAAAATGGAGCAAGTGGTAGCAAGAAAAGCCCTTTGATTTCCTTGGCCGAAGTTGCAGTTCAAAGTCTTGAAGTTTTGGATTTGTCTCACAATGCATTTTCTGGTGAAATCACATCTGCCATTGGAGGTTTAAGCAGCTTGCATGTTTTGAATTTATCATATAACTCTCTTACGGGTCCTATACCAGCTGCAATTGGTGAGTTGAAAACATGTTCTAGTCTTGACTTGAGCTATAATAATCTAAATGGAAGTATACCTTGGCAAATAGGAGGAGCTGTGTCATTGAAAGAACTGGTACTGAAAAAGAACTTCCTAAGTGGGAAAATTCCAACGTCAATTGAGAACTGCTCTTTGCTAACCACACTGACCCTGTCCCAGAACTGGCTGAGTGGCCCTATACCTGCAGCAGTTGCAAAACTTACCAACCTGCAAACTGTGGACTTATCTTACAACAACCTTACTGGAAACCTTCCTAAGCAACTGGCCAACCTTGCCAATCTTCTTTCCTTCAATTTATCTCACAACAACCTTCAGGGTGAACTGCCGGCCTGTAGTTTTTTCAACACCATTTCGCCAACTTCTGTTTCTGGCAATCCATCACTTTGTGGCGCTGCAGTAAACAAATCATGTCCTGCTGTGCTTCCAAAGCCTATTGTTCTAAATCCCAACACTTCTACTGACGTTAGCCCAGGTGCATTGCCTCAAACCTCGGGTCACAAAAGAATCATTCTCAGCATTTCGGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTCATTGGTGTTATTAGCATCACTGTTCTCAACCTCCGTGTTCGCTCCTCCACGTCTAGAGATGCAGCTGCCCTCACATTTTCTGCAGGAGATGAATACAGCCGTTCCCCTACTACAGATGCCAACTCTGGCAAGCTTGTCATGTTTTCTGGTGAGCCTGATTTCAGTTCTGGTGCGCATGCTTTGCTTAATAAGGACTGTGAGCTTGGGCGTGGAGGATTTGGTGCAGTGTACCAAACGGTTCTTAGAGATGGGCATTCAGTTGCAATAAAGAAGCTCACTGTATCAAGCCTTGTGAAGTCTCAAGAAGACTTTGAAAGAGAAGTGAAGAAGTTAGGCAAAATCAGACACCAAAACCTCGTGGAACTGGAGGGTTATTATTGGACACCATCGCTGCAGCTTCTTATATATGAATACGTCTCTGGTGGTAGTCTGTACAAGCATCTCCATGAAGGATCTGGTGGAAACTTCCTCTCATGGAATGAGAGGTTTAATGTGATTCTGGGAACCGCCAAGGCCTTGGCACACTTGCACCATTCCAACATTATTCACTATAACATAAAGTCAACCAATGTCCTTCTGGACAGTTATGGTGAACCAAAGATAGGAGACTTTGGCCTCGCAAGGCTGCTACCGATGCTTGACCGATATGTCTTGAGCAGCAAAATCCAGAGTGCGCTCGGGTACATGGCACCGGAATTTGCCTGCAAAACAGTGAAGATCACTGAGAAGTGTGATGTATACGGGTTTGGTATCCTGGTTTTGGAGATTGTTACAGGGAAGAGGCCAGTGGAATACATGGAGGATGATGTGGTGGTACTTTGTGACATGGTGAGAGGCGCTTTGGAGGAAGGTAGGGTGGAGGAATGCATTGATGAGAGGCTCCAAGGGAAATTCCCAGCAGAAGAAGCCATTCCTGTAATGAAGCTAGGCTTAATATGTACTTCTCAAGTGCCATCTAACAGGCCTGACATGGGAGAGGTAGTTAACATATTGGAGCTCATTAGATGTCCCTCTGAAGGACAAGAAGAATTGGGATGA 2937 0.461 MRALFSSMRGFLFLVWLLEVVFVAVTAVNPSLNDDVLGLIVFKADIRDPKGKLASWSEDDESACGGGWVGVKCNPRSNRVVEVNLDGFSLSGRIGRGLQRLQFLRKLSLANNNLTGGINSNIARIDSLRVIDLSGNSLSGEVSEDVFRQCGSLRAVSLARNRFSGSIPSTLGECSALAAIDLSNNQFSGSVPSGIWSLSALRSLDLSDNLLEGEISKGVEAMKNLRSVSLARNRLTGNVPAGFGSCSLLRSIDLGNNSFSGSIPGDFKELTLCGYLSLRGNAFSGELPEWIGEMRGLETLDLSNNALTGRIPNSVGNLQSLKMLNFSGNGITGSLPESMVNCTKLLVLDVSRNSMSGGLPLWIFKSDLGKVLLSENGASGSKKSPLISLAEVAVQSLEVLDLSHNAFSGEITSAIGGLSSLHVLNLSYNSLTGPIPAAIGELKTCSSLDLSYNNLNGSIPWQIGGAVSLKELVLKKNFLSGKIPTSIENCSLLTTLTLSQNWLSGPIPAAVAKLTNLQTVDLSYNNLTGNLPKQLANLANLLSFNLSHNNLQGELPACSFFNTISPTSVSGNPSLCGAAVNKSCPAVLPKPIVLNPNTSTDVSPGALPQTSGHKRIILSISALIAIGAAAVIVIGVISITVLNLRVRSSTSRDAAALTFSAGDEYSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLRDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVELEGYYWTPSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLLDSYGEPKIGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGILVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01934 978 Gene3D Phosphorylase Kinase; domain 1 689 771 - -
Viun9g01934 978 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
Viun9g01934 978 Gene3D Ribonuclease Inhibitor 296 587 IPR032675 -
Viun9g01934 978 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 689 771 - -
Viun9g01934 978 ProSitePatterns Protein kinases ATP-binding region signature. 701 724 IPR017441 GO:0005524
Viun9g01934 978 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 772 973 - -
Viun9g01934 978 Pfam Leucine Rich repeat 514 529 IPR001611 GO:0005515
Viun9g01934 978 ProSiteProfiles Protein kinase domain profile. 695 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g01934 978 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 31 964 - -
Viun9g01934 978 SUPERFAMILY Protein kinase-like (PK-like) 699 962 IPR011009 -
Viun9g01934 978 SUPERFAMILY L domain-like 60 376 - -
Viun9g01934 978 Gene3D Transferase(Phosphotransferase) domain 1 772 976 - -
Viun9g01934 978 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 314 588 - -
Viun9g01934 978 Gene3D Ribonuclease Inhibitor 193 289 IPR032675 -
Viun9g01934 978 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 33 313 - -
Viun9g01934 978 PRINTS Leucine-rich repeat signature 418 431 - -
Viun9g01934 978 PRINTS Leucine-rich repeat signature 297 310 - -
Viun9g01934 978 SMART LRR_typ_2 318 342 IPR003591 -
Viun9g01934 978 SMART LRR_typ_2 125 149 IPR003591 -
Viun9g01934 978 SMART LRR_typ_2 222 246 IPR003591 -
Viun9g01934 978 SMART LRR_typ_2 514 537 IPR003591 -
Viun9g01934 978 SMART LRR_typ_2 418 442 IPR003591 -
Viun9g01934 978 SMART LRR_typ_2 198 221 IPR003591 -
Viun9g01934 978 SMART LRR_typ_2 294 317 IPR003591 -
Viun9g01934 978 SMART LRR_typ_2 394 417 IPR003591 -
Viun9g01934 978 SMART LRR_typ_2 538 562 IPR003591 -
Viun9g01934 978 CDD STKc_IRAK 701 967 - -
Viun9g01934 978 Pfam Protein tyrosine and serine/threonine kinase 697 963 IPR001245 GO:0004672|GO:0006468
Viun9g01934 978 Pfam Leucine rich repeat 224 282 IPR001611 GO:0005515
Viun9g01934 978 Pfam Leucine rich repeat 396 455 IPR001611 GO:0005515
Viun9g01934 978 Pfam Leucine rich repeat 152 211 IPR001611 GO:0005515
Viun9g01934 978 Pfam Leucine rich repeat 295 354 IPR001611 GO:0005515
Viun9g01934 978 Pfam Leucine rich repeat N-terminal domain 33 74 IPR013210 -
Viun9g01934 978 SUPERFAMILY L domain-like 263 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01934 Viun-Chr9 29208013 29212633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01934 9 978 Receptor kinase-like Gene Family AT3G56370 67.213 0.0 1275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Viun9g01934 PK_Tyr_Ser-Thr 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01934 - - gmx:100791629 1726.06