Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01933 ATGAAGCATTATCGAAAGAAAAGTTCGAAGTCTCACAAAGATGAAAGTTCAAATTTTGATACAAGAGTATTGATAGATTTCATGAAGCTGTCAAAGAATGGTGATGCTACTCAAGAACTATTGAACAATAAGACAACCAATTCATCTATTTCGGACTCAAAAGATGATGATAGGAAGAATGCAAATGTGAAAGAAAGAAAGACTTTTTCTTGCAACTATTGTAAGAAAGAGTTTTTTACCTCACAAGCTTTGGGAGGACACCAAAACGCACACAAACAAGAACGGGCTATGACAAAACGTGTCGAAGGTTTTGATGTTAGTGGGTTAGAACACTTTCCTTATTACTCTTATTATTCAAGTTTATATAACTCTCTTCATCCCTTTTATGGAAAATCCTATAATGGGACACTTGGAGTCAGAAAAGACTCCATGATTCAGAAGCTTTCTTGGACTCCAAGATATGAACATTCATTGTTTAAAAGAGATCATGAAAAGTCAATATTTGATGGATTCACAATTATGAAAAGTGATTATCCAATTGTAGAGAGTGACCATGATGACAAAACCACTCTTCAAACACTCTCTCTTTTTCCGAATGATGCTAGCACTTCATCAAACCAACTACGAAAGACGACAATGGTTGCAACAACTTCCGAGGAGACATCTTGCAATCTTGATTTGTCGCTCAATCTTTATATGTAG 702 0.3519 MKHYRKKSSKSHKDESSNFDTRVLIDFMKLSKNGDATQELLNNKTTNSSISDSKDDDRKNANVKERKTFSCNYCKKEFFTSQALGGHQNAHKQERAMTKRVEGFDVSGLEHFPYYSYYSSLYNSLHPFYGKSYNGTLGVRKDSMIQKLSWTPRYEHSLFKRDHEKSIFDGFTIMKSDYPIVESDHDDKTTLQTLSLFPNDASTSSNQLRKTTMVATTSEETSCNLDLSLNLYM 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01933 233 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 231 IPR044246 GO:0009788
Viun9g01933 233 MobiDBLite consensus disorder prediction 40 62 - -
Viun9g01933 233 Pfam C2H2-type zinc finger 69 93 - -
Viun9g01933 233 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Viun9g01933 233 Gene3D Classic Zinc Finger 51 104 - -
Viun9g01933 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Viun9g01933 233 SUPERFAMILY beta-beta-alpha zinc fingers 66 97 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01933 Viun-Chr9 29178416 29179117 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01933 65 149 C2H2 Transcription Factor Family AT5G10970 44.706 1.01e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun9g01933 zf-C2H2_6 2.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01933 - - var:108320958 270.781