Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01932 ATGAAGCATTATTCGAAAAAGAGTTTGAAGCCTCGTGAAGATGAATGTTCAAATTCTGATACAAGAGTGTTGATTGATTTTATGAAGATGTCAAAGAATGGTGATATTACTCGAGAATCATCGAACAATAAGGCAATCAATTCATCTATTTCAGACTCAAGAGATGAAGATGAGAAGATTGGAAATGTGAAAGAAGGAAAGACTTTTTGTTGCAACTATTGTAAGAAAGAGTTTTCTACCTCACAAGCTTTGGGAGGACACCAAAACGCACACAAACAGGAACGAGCTATGGCAAAACGTGTTGAAGCTTTTGATGTTAGTGGGTTAGGACATTTTCCTTATTCCTCTTATTATTCAAGTTTATATAACTTTCATCATTCCCTTTATGGAGGGTCCTTTAATAGGGAACTTAGGGTCAGAAAGGACTCCATGATTCAGAAGCTTCCTTGGATTCCAAGGTATGAACATTCATTGTTTAAAAGGAATAATGGAAGATTGAGTTCGTCAATATTTGATGGGTTTGAACCTATGAAAAGTGATTATCAAATTCCAAAGAGTGATGCAACTCCAAACCTGAGAGTAGAGAATGATAATGGTAGAAATAGTGATAAAGTTGAAACACTACCTCTTTTTACAGATGTTGTCAACAATTCTTTAAGTCAATCCGAGATAACAAAACTTGATGATCCTTTCATTCCAAAAAGATCTTCTTATGGATCATCCTTTAATATTGATTTGACACTCAAGCTTTAA 753 0.3453 MKHYSKKSLKPREDECSNSDTRVLIDFMKMSKNGDITRESSNNKAINSSISDSRDEDEKIGNVKEGKTFCCNYCKKEFSTSQALGGHQNAHKQERAMAKRVEAFDVSGLGHFPYSSYYSSLYNFHHSLYGGSFNRELRVRKDSMIQKLPWIPRYEHSLFKRNNGRLSSSIFDGFEPMKSDYQIPKSDATPNLRVENDNGRNSDKVETLPLFTDVVNNSLSQSEITKLDDPFIPKRSSYGSSFNIDLTLKL 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01932 250 MobiDBLite consensus disorder prediction 34 57 - -
Viun9g01932 250 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 9 250 IPR044246 GO:0009788
Viun9g01932 250 ProSitePatterns Zinc finger C2H2 type domain signature. 70 91 IPR013087 -
Viun9g01932 250 Gene3D Classic Zinc Finger 36 106 - -
Viun9g01932 250 MobiDBLite consensus disorder prediction 34 49 - -
Viun9g01932 250 Pfam C2H2-type zinc finger 69 93 - -
Viun9g01932 250 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Viun9g01932 250 SUPERFAMILY beta-beta-alpha zinc fingers 66 96 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01932 Viun-Chr9 29166133 29166885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01932 29 186 C2H2 Transcription Factor Family AT1G24625 31.875 4.81e-17 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun9g01932 zf-C2H2_6 2.4e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01932 - - var:108320958 254.218