Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01931 ATGTCCTCCGAAGACATCACCCTCGTCCCCGACCAGAGGATCGAGAACGGTCTCAGCTCCCCTCTTGTCTTCCAAGATGACCCTCTCCGCTTCAATTGCCCCACGCAGCAGCGTCGGGTCGGGGACCCGGGTCCTAAAACCCGTGACCTCGGCGCCTTCATCGACGAGAAGATGTTCATCGACCGCGACCGCTTCTTCGCCGCCCAGAACCCTGACTTCCGCCGCTACGCCGACTGCTCCTCCCGCCAAGACCCCCGAAATTGGACCGTCAACGGCACCGCCGCCACTCCCAGCGAGGACGACGATTCCGACGAGGATGACGAAGATGACGACGAGGAGGACGACGACGAAGGCGATACGGAAGTTGAAGGACTCGTCGGTGGTGGAAGCAAAAGCGAAATTATCGCTAACAACAACGGTGGCGGTGGTAATTTGCCTTCTGTTGCAAACGGGAAAGCTCACGCTTTTGTTTCTGGGAGAGAGCTGTTGGGGAAGGACGGTGGAGAGATTGGGCAGTTGGTGCTTAGCAATGTGAGTGGTGGTGGTGATGACGATCATCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCTGTTACCGTTGCTGAAACTGACTGTGAGGACTACTATTCGCACTACCTTCAAGGTGCTGATGGGGCTTCTGGCCACAAAGTTATGGTGGATGATGGTGGTTGTGGGTTTAGTGGGAGAAAGGATGCAATGTATTCTACCGAGTCAGGGGAATCACTCAGGAATATTCTTTCAGATCCTGTTACTGGAGCTCTTATGGATGACGCAATGATATTACCGTGTGGACATTCATTTAGCGGAAGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCCACAACCGAGGAATCAATATCTCCAAACCTATCACTTCGAGCTGCTGTGCAGGCATATCGTCGGGAAGAGGAGTCTCAATTTTACCGGTCACCTAAACGAAGAAGAGAGAGATTCGATCAGGACAGGGTGGATTTGGAGATTCATCTGTTATGGAACCATCAAGGAGTAGAGGTGTTCAGTTTCCATTTGCTGTTATGGACCGGGTTGTCATAA 1095 0.5205 MSSEDITLVPDQRIENGLSSPLVFQDDPLRFNCPTQQRRVGDPGPKTRDLGAFIDEKMFIDRDRFFAAQNPDFRRYADCSSRQDPRNWTVNGTAATPSEDDDSDEDDEDDDEEDDDEGDTEVEGLVGGGSKSEIIANNNGGGGNLPSVANGKAHAFVSGRELLGKDGGEIGQLVLSNVSGGGDDDHRQEGLGKSQNSVTVAETDCEDYYSHYLQGADGASGHKVMVDDGGCGFSGRKDAMYSTESGESLRNILSDPVTGALMDDAMILPCGHSFSGSGIQHVIRMKACCTCSQPTTEESISPNLSLRAAVQAYRREEESQFYRSPKRRRERFDQDRVDLEIHLLWNHQGVEVFSFHLLLWTGLS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01931 364 ProSiteProfiles U-box domain profile. 248 320 IPR003613 GO:0004842|GO:0016567
Viun9g01931 364 MobiDBLite consensus disorder prediction 98 122 - -
Viun9g01931 364 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 4 336 - -
Viun9g01931 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 329 IPR013083 -
Viun9g01931 364 MobiDBLite consensus disorder prediction 77 139 - -
Viun9g01931 364 SUPERFAMILY RING/U-box 248 321 - -
Viun9g01931 364 MobiDBLite consensus disorder prediction 82 97 - -
Viun9g01931 364 Pfam U-box domain 253 318 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01931 Viun-Chr9 29151403 29155535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01931 19 349 Plant U-box Gene Family AT5G05230 36.919 9.94e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01931 - - gmx:100786717 527.324