Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01930 ATGTCCTCCGAAGACATCACCCTCGTCCCCGACCAGAGGATCGAGAACGGTCTCAGCTCCCCTCTTGTCTTCCAAGATGACCCTCTCCGCTTCAATTGCCCCACGCAGCAGCGTCGGGTCGGGGACCCGGGTCCTAAAACCCGTGACCTCGGCGCCTTCATCGACGAGAAGATGTTCATCGACCGCGACCGCTTCTTCGCCGCCCAGAACCCTGACTTCCGCCGCTACGCCGACTGCTCCTCCCGCCAAGACCCCCGAAATTGGACCGTCAACGGCACCGCCGCCACTCCCAGCGAGGACGACGATTCCGACGAGGATGACGAAGATGACGACGAGGAGGACGACGACGAAGGCGATACGGAAGTTGAAGGACTCGTCGGTGGTGGAAGCAAAAGCGAAATTATCGCTAACAACAACGGTGGCGGTGGTAATTTGCCTTCTGTTGCAAACGGGAAAGCTCACGCTTTTGTTTCTGGGAGAGAGCTGTTGGGGAAGGACGGTGGAGAGATTGGGCAGTTGGTGCTTAGCAATGTGAGTGGTGGTGGTGATGACGATCATCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCTGTTACCGTTGCTGAAACTGACTGTGAGGACTACTATTCGCACTACCTTCAAGGTGCTGATGGGGCTTCTGGCCACAAAGTTATGGTGGATGATGGTGGTTGTGGGTTTAGTGGGAGAAAGGATGCAATGTATTCTACCGAGTCAGGGGAATCACTCAGGAATATTCTTTCAGATCCTGTTACTGGAGCTCTTATGGATGACGCAATGATATTACCGTGTGGACATTCATTTAGCGGAAGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACCCACAACCGAGGAATCAATATCTCCAAACCTATCACTTCGAGCTGCTGTGCAGGCATATCGTCGGGAAGAGGAGTCTCAATTTTACCGGTCACCTAAACGAAGAAGAGAGAGATTCGATCAGGGTGGATTTGGAGATTCATCTGTTATGGAACCATCAAGGAGTAGAGGTGTTCAGTTTCCATTTGCTGTTATGGACCGGGTTGTCATAAAGGGAAACAAAAGGACACCACAACGCTTTGTTGGGCGTGAAGCGATTGTAACAACGCAATGCCTGAATGGATGGTATGTAGTGAAGACATTGGACAATGCAGAGAGTGTAAAGTTGCAGTATCGATCACTCGCTAAGGTTTTGGATGATCCTTCAAAACCTGCCTCCAGCAAGATGTCACCTAATTGGCTTTAG 1284 0.5093 MSSEDITLVPDQRIENGLSSPLVFQDDPLRFNCPTQQRRVGDPGPKTRDLGAFIDEKMFIDRDRFFAAQNPDFRRYADCSSRQDPRNWTVNGTAATPSEDDDSDEDDEDDDEEDDDEGDTEVEGLVGGGSKSEIIANNNGGGGNLPSVANGKAHAFVSGRELLGKDGGEIGQLVLSNVSGGGDDDHRQEGLGKSQNSVTVAETDCEDYYSHYLQGADGASGHKVMVDDGGCGFSGRKDAMYSTESGESLRNILSDPVTGALMDDAMILPCGHSFSGSGIQHVIRMKACCTCSQPTTEESISPNLSLRAAVQAYRREEESQFYRSPKRRRERFDQGGFGDSSVMEPSRSRGVQFPFAVMDRVVIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDPSKPASSKMSPNWL 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01930 427 ProSiteProfiles U-box domain profile. 248 320 IPR003613 GO:0004842|GO:0016567
Viun9g01930 427 MobiDBLite consensus disorder prediction 98 122 - -
Viun9g01930 427 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 4 422 - -
Viun9g01930 427 SUPERFAMILY RING/U-box 248 320 - -
Viun9g01930 427 Pfam U-box domain 253 318 IPR003613 GO:0004842|GO:0016567
Viun9g01930 427 MobiDBLite consensus disorder prediction 77 139 - -
Viun9g01930 427 MobiDBLite consensus disorder prediction 82 97 - -
Viun9g01930 427 MobiDBLite consensus disorder prediction 320 345 - -
Viun9g01930 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 328 IPR013083 -
Viun9g01930 427 MobiDBLite consensus disorder prediction 320 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01930 Viun-Chr9 29150719 29155535 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01930 19 427 Plant U-box Gene Family AT5G05230 44.471 5.19e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01930 - - gmx:100786717 703.36