Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01919 ATGACGAGGTCGACACAGATAATGGCTCTTCATCACCGCTTCTTGCTTGACTCCAATTCAAGCACGCCTGCACCAAGTAACGTGAATAGGACAAGAGAGGCTTTCACAGGTGATGCAAATTTTGACACCAATATGGTGATTATCTTGGCTGCGTTGCTTTGTGCGCTTATATGTGCTTTGGGACTCAACTCAATTGTGCGATGTGCTCTAAGATGTAGCCGCAGGTTTGCTTTCGAGACCCCAGAGGAGACTGCGGCACGTTTGGTGGCAAAAGGCTTAAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTAGTGTCGGTATTGCAGCCACAGATTGTCCTATTTGCCTTGGGGAGTTTCTGGATGGGGAGAAAGTAAGAGTGTTGCCGAAATGTAACCATGGATTCCATGTAAGGTGCATAGATACATGGCTCCTCTCACACTCCTCTTGTCCTAATTGCAGGCAATCTTTGCTTGACCAACCCACCATTTCTGGAGCTGTTGCTGCAGGAAACAATAACTATGCAGGGAATGCTTCAGGAGGACCGGGACATGTGTCTTTAGCCGTGGTTGTGGAAGAGATTGGTTAA 606 0.4703 MTRSTQIMALHHRFLLDSNSSTPAPSNVNRTREAFTGDANFDTNMVIILAALLCALICALGLNSIVRCALRCSRRFAFETPEETAARLVAKGLKKSALHQIPIVVYGSGSVGIAATDCPICLGEFLDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCRQSLLDQPTISGAVAAGNNNYAGNASGGPGHVSLAVVVEEIG 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01919 201 SMART ring_2 118 159 IPR001841 -
Viun9g01919 201 Pfam Ring finger domain 117 160 IPR001841 -
Viun9g01919 201 SMART FANCL_C_2 114 167 - -
Viun9g01919 201 CDD RING-H2_EL5-like 117 160 - -
Viun9g01919 201 SUPERFAMILY RING/U-box 117 166 - -
Viun9g01919 201 PANTHER RING-H2 FINGER PROTEIN ATL78 18 166 IPR044602 GO:0016567|GO:0016740
Viun9g01919 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 167 IPR013083 -
Viun9g01919 201 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01919 Viun-Chr9 29103821 29105569 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01919 13 168 C3H Transcription Factor Family AT3G10910 61.212 8.33e-63 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01919 - K19040 gmx:100787273 311.612