Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01897 ATGGGAATCGTTGGTAATATTCGCTTCCCTTCAGTGCTCAAAGTTCCTTTGGATACGAAACTACACAACAAATCATTATGGCGATGTATGGTTCCTCCTTCTTATCTTAACTACCCCATAAGGTTCACTCCAATATCTTGTAAGCTGCCAGAAAGTGGGACTGAGGACAATCCCACCGCCACAAGCAAGAGCCTTTACAAGAGCAAGGACAGGATGGAGGACTACAACGTCGCCATGAAGAGAATGATGAGGAACCCTTATGAGTATCACCATGATCTGGGTATGAATTATACTCTTATCACGGACTACTTGATTGTGGGCTCTCAACCGCAGAAACCGGAAGACATAGATCACCTAAAAAATGAAGAGTGTGTGGCTTACATTCTAAATTTGCAACAGGATAAGGATGTTGATTACTGGGGAATAGATTTACAATCAATAATAAGAAGGTGTCATGAACTTGAAATTGGCCACATGAGGAGACCGGCAAAAGACTTTGATCCAGGGTCCTTGCGAAGTGAACTACCTAAAGCAGTTGCGTCCTTAGAATGGGGAATTTCTGAGGGGAAAGGAAGAGTTTATGTACACTGTACTGCAGGGCTTGGAAGAGCTCCAGCGGTGGCAATTGCTTATTTGTTCTGGTTTTGTGGCATGAAGCTAAATGAAGCGTATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAACAGCAATACGTGGAGCTACGTATGATTTGGCTAAGAATGATCCATTCAAGGAGCCATTTGAAAATCTTCCAGAATATGCATTTGAGGATATAGCAGACTGGGAAAGAAACTTGATCCAAAATCGTGTCCGCTCCCTTCGTCATACTTGA 861 0.4262 MGIVGNIRFPSVLKVPLDTKLHNKSLWRCMVPPSYLNYPIRFTPISCKLPESGTEDNPTATSKSLYKSKDRMEDYNVAMKRMMRNPYEYHHDLGMNYTLITDYLIVGSQPQKPEDIDHLKNEECVAYILNLQQDKDVDYWGIDLQSIIRRCHELEIGHMRRPAKDFDPGSLRSELPKAVASLEWGISEGKGRVYVHCTAGLGRAPAVAIAYLFWFCGMKLNEAYDMLTSKRPCGPNKTAIRGATYDLAKNDPFKEPFENLPEYAFEDIADWERNLIQNRVRSLRHT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01897 286 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 93 238 IPR029021 -
Viun9g01897 286 Pfam Dual specificity phosphatase, catalytic domain 125 236 IPR000340 GO:0008138|GO:0016311
Viun9g01897 286 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 79 286 - -
Viun9g01897 286 SMART dsp_5 96 238 IPR020422 GO:0006470|GO:0008138
Viun9g01897 286 CDD DSP_laforin-like 95 242 IPR045204 GO:0019203
Viun9g01897 286 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 173 232 IPR000387 GO:0016311|GO:0016791
Viun9g01897 286 Gene3D Protein tyrosine phosphatase superfamily 79 286 IPR029021 -
Viun9g01897 286 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 47 253 - -
Viun9g01897 286 ProSiteProfiles Dual specificity protein phosphatase domain profile. 96 253 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01897 Viun-Chr9 28884358 28888538 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01897 36 286 Protein tyrosine phosphatase (PTP) family AT3G10940 74.900 1.16e-140 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01897 - - gmx:100787079 464.922