Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01892 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAGAAGATCAAAAGGGAAGGAGATGTTTCTTCTCAAATGGGAAGAAGACACATGTTAGGTCCTCCTGGAACCCTAAATACCATCACCCCTTGTGCAGCATGTAAGTTGTTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCACCATATTTCTCTCCCCATGAGCCTCAAAAGTTTGCTTCAGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAGATGCTCATGGAAGTACCAGAGTGTCAGAGAGCTGATGCAGCAAATAGTCTAGTTTATGAAGCTAATGTTCGGCTAAGAGACCCTGTGTATGGATGCATGGGTGCAATTTCTGGTTTGCAGCAACAAGTTCAATCTTTACAAGCAGAACTTAATGTAGTGAGGGCTGAAATACTTAAATACAAACTCAGGGAAGCTCACATGATACCACCCTCTTCTCATCATGTTCCAATGCTTCCTTCATCTGGGGCTGTTTCAATCGCTGCTCCACCTCCACCACCTCCTCCACCACCACCACTTCCACCTCCTAATTCTATTCCTCAAACTTCTTCCTCTTCTTCCATCTACATCCAACACAGAGATCCCACCACCACTTACACCACAATTTCAACTGATAATATCTCCTATTTTGGTTAA 669 0.438 MSRERERFDEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISGLQQQVQSLQAELNVVRAEILKYKLREAHMIPPSSHHVPMLPSSGAVSIAAPPPPPPPPPPLPPPNSIPQTSSSSSIYIQHRDPTTTYTTISTDNISYFG 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01892 222 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Viun9g01892 222 MobiDBLite consensus disorder prediction 191 208 - -
Viun9g01892 222 MobiDBLite consensus disorder prediction 170 190 - -
Viun9g01892 222 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Viun9g01892 222 MobiDBLite consensus disorder prediction 164 208 - -
Viun9g01892 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 38 181 - -
Viun9g01892 222 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01892 Viun-Chr9 28779686 28781100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01892 27 171 AS2 family AT2G40470 82.993 2.58e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun9g01892 LOB 4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01892 - - gmx:100790799 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01892 9 28779686 28781100 Viun9g01892 9 28779686 28781100 ECH
Viun1g03309 1 40672178 40678293 Viun9g01892 9 28779686 28781100 ECH