Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01875 ATGGACTTGGCCGCGAAGCTTCATCACTTAGACCTCACCGGCGCGGTCATTTTGGATGCACGAAAGCCCTCCGTGCTACGCCACCTTCCGCCACGCGTCACCACCAGAGCGAACACCAACAACACTAACATCAGCACCAATCTAATTTGCACCAACCGCTTCTCGGGCCCATTGCGGCCCAATTCCGCTTCCTCTTCGGGCGTGACAACTGTAACAGTTGACGACGACATCGAGTCTCTCTTCTCCGAAACCGCCTCGGAGGAGCCGCGGCGCAGGGGGAAGCAGCAGAGTAGCGGCGCGTCGGGCGTGTCGTCGGGGGTGAAGCTGGAAAACGTAGGGAAGGCGTACAAGGGCGTGACAGTGTTGAAGGATGTGAGTTGGGAGGTGAAGAAGGGGGAGAAGGTGGGTTTGGTTGGCGTGAACGGCGCGGGGAAGACGACGCAGATGAGGATTATCGCGGGATTGGAGGAGCCGGATTACGGGAATGTCATAAAGGCGAAGCCGAACATGAAAATCGCGTTTCTGAACCAGGAGTTCGAGGTGTCGCTGAGCAGGACAGTGAGGGAGGAGTTCATGAGCGCGTTCAAGGAGGAAATGGAGGTGGCGGGGAAGTTGGAGAGGGTGCAGAAGGCGCTCGAGGGTGCTGTCAACGATTTGGAGTTTATGGGAAGGCTTTTGGATGAGTTTGATTTGCTTCAGCGGAGGGCTCAGTCTGTGGACCTCGATGAGGTTGATGCGAAAATAAATAAGTTGGTGCCTGAACTTGGCTTTTCTCCTGAGGATTCTGATAGGTTGGTTGCGTCTTTCAGTGGAGGCTGGCAAATGAGAATGTGTCTTGGAAAGATTCTACTTCAGGAGCCTGATTTGTTGCTGTTAGATGAGCCCACAAATCACCTTGATCTTGACACCATTGAGTGGCTTGAGGAGTATCTTAACCAGCAGGATGTGCCAATGGTTATCATTTCCCATGACCGAGCTTTCCTTGACCAACTGTGTACAAAAATTGTGGAAACTGACATGGGTGTTTCCAGGACGTTTGAGGGAAATTATTCGCAGTATGTAATTTCAAAAGCAGCATGGATTGAAGCACAGTATGCTGCTTGGGAGAAGCAGCAGAAAGAAATTGAGCAGACAAAAGACTTGATCGGTAGATTAAGTGCTGGAGCAAATTCTGGCCGTGCCTCATCTGCTGGGAAGAAGCTGGAGAGACTCCAGGAAGAGGAGCTGGTGGAGAAGCCATTTGAACGCAAACAGATGAAAATCAAGTTCCCTGAGCGTGGAAAGAGTGGAAGATCTGTTGTAACAATTAAGAACTTGGAATTTGGCTTTGAGGATAAGCCACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCTATTATTGGTCCAAATGGATGTGGCAAGAGTTCTTTACTGAAATTGATTATGGGTTTGGAAAAGCCAACTGGGGGTGAAGTTTTGCTTGGGGAGCATAATGTGTTACCTAACTATTTTGAGCAGAATCAGGCTGAGGCGCTTGATCTAGACAAGACAGTGCTTGAGACAGTAGAGGAAGCAGCAGAGGACTGGAGGATTGACGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGACCGAAAAGTTTCATTATTGAGTGGTGGTGAGAAGGCACGGTTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGTTGGATGAACCCACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAGTGAATACGAGGGCACTGTTATTACAGTATCTCATGACAGATACTTCATAAAGCAAATAGTTAACAGGGTCATAGAAATTAAAGATGGCACTATACAGGATTATGCAGGTGATTACAATTATTATTTAGAGAAGAATCTTGATGCTAGGGATAGAGAACTTGAACGCGAGGCAGAGCTTGATAGCAAAGCTCCTAAAGTGAAAGCCAAATCCAAGATGTCGAAGGCTGAGAAAGAAGCACGGAAGAAGCAAAAGATGCAGGCCTTTCAGGCCGCAAAACAGAAGTCTAAAGGTGTGAAAAATTCAAAGAGATGGAATTGA 2106 0.4725 MDLAAKLHHLDLTGAVILDARKPSVLRHLPPRVTTRANTNNTNISTNLICTNRFSGPLRPNSASSSGVTTVTVDDDIESLFSETASEEPRRRGKQQSSGASGVSSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDYGNVIKAKPNMKIAFLNQEFEVSLSRTVREEFMSAFKEEMEVAGKLERVQKALEGAVNDLEFMGRLLDEFDLLQRRAQSVDLDEVDAKINKLVPELGFSPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNQQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIEQTKDLIGRLSAGANSGRASSAGKKLERLQEEELVEKPFERKQMKIKFPERGKSGRSVVTIKNLEFGFEDKPLFKKANLTIERGEKIAIIGPNGCGKSSLLKLIMGLEKPTGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYEGTVITVSHDRYFIKQIVNRVIEIKDGTIQDYAGDYNYYLEKNLDARDRELEREAELDSKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGVKNSKRWN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01875 701 Pfam ABC transporter 336 423 IPR032781 -
Viun9g01875 701 MobiDBLite consensus disorder prediction 651 701 - -
Viun9g01875 701 Gene3D - 397 661 IPR027417 -
Viun9g01875 701 Pfam ABC transporter 122 297 IPR003439 GO:0005524
Viun9g01875 701 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 106 692 - -
Viun9g01875 701 CDD ABCF_EF-3 108 337 - -
Viun9g01875 701 CDD ABCF_EF-3 434 626 - -
Viun9g01875 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 639 IPR027417 -
Viun9g01875 701 FunFam ABC transporter ATP-binding protein 394 664 - -
Viun9g01875 701 Gene3D - 104 389 IPR027417 -
Viun9g01875 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 342 IPR027417 -
Viun9g01875 701 Pfam ABC transporter 450 581 IPR003439 GO:0005524
Viun9g01875 701 Coils Coil 661 690 - -
Viun9g01875 701 SMART AAA_5 458 626 IPR003593 GO:0016887
Viun9g01875 701 SMART AAA_5 131 346 IPR003593 GO:0016887
Viun9g01875 701 ProSitePatterns ABC transporters family signature. 269 283 IPR017871 GO:0005524|GO:0016887
Viun9g01875 701 MobiDBLite consensus disorder prediction 82 105 - -
Viun9g01875 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 434 649 IPR003439 GO:0005524
Viun9g01875 701 ProSitePatterns ABC transporters family signature. 553 567 IPR017871 GO:0005524|GO:0016887
Viun9g01875 701 MobiDBLite consensus disorder prediction 651 681 - -
Viun9g01875 701 FunFam Putative ABC transporter ATP-binding component 106 392 - -
Viun9g01875 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 107 365 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01875 Viun-Chr9 28557339 28562769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01875 431 651 Calmodulin-binding Proteins AT2G36910 26.316 3.23e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01875 - - gmx:100796907 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01875 9 28557339 28562769 Viun9g01875 9 28557339 28562769 ECH