Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01858 ATGATGATGAACACGCATGCATTGTCAAGGCTGTTTCCGGGTTTGAATAGGGAGAGAGAGATGTCTGCTATGGTTTCAGCTTTGACCCACGTTGTCACCGGAGAGGTTCCAACACCCACTGATTCTACTTTTCTCCATCATCATCATGCTGTTACACCACACGTGCCTTCTTCTGCTTCTACAACACCCTCTTTACCTTCTTCATCTCATTATGTTCCTGCCACCTCTTCTCACAAGAGACCTAGGGAACAAGACGCACCGTGCTTCTCTCAAGCCTCTTCTATGCCAAGAAGTGGAGAATGTTCAAACAATTCGAGAAGCAGGATAACAAGGGAAATGGGAAATGCTGTGTATGAATACAAGACGACGGAGAATGTTAGAGGGGACGAAGAGAGGAGGAAATACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATAAGAGATCCGTTCAAGGCGGCGAGGGTGTGGTTGGGGACGTTTGACACGGCGGAGGCAGCCGCCAGAGCATACGACGAAGCTGCTCTTCGATTTAGAGGAAACAAGGCCAAACTGAACTTCCCGGAGAATGTCACTCTCCGGCAACCTCAGTTTAGTGTTTCCAATTCTCCCACTTCTCTTGTGTCCATTTCAACGTCGACGGATCCAGTTGTGCATACTCCAACTTTTCTCCCCTCTCAAGGTGCCACCGATGTTTACCAGTATTTTCAGCTCTCGGGCTTCCCCACCACCCTTTATGATGATAGGACTCTAGTCACGTCTTCCATGGCTTCTCATCTTCACTCTTCTTCCTCCTCTTCTTCTTCTTCTTCTGCCTTTGTAACTTCTTCTCAGGACACTTCACTTTCTTCCTTTTATTCTAGCCAGATACCACCTTGGTCAGCTTCTGCTCCTAGCTCTTCTTCCTCCGGATGA 924 0.4892 MMMNTHALSRLFPGLNREREMSAMVSALTHVVTGEVPTPTDSTFLHHHHAVTPHVPSSASTTPSLPSSSHYVPATSSHKRPREQDAPCFSQASSMPRSGECSNNSRSRITREMGNAVYEYKTTENVRGDEERRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRQPQFSVSNSPTSLVSISTSTDPVVHTPTFLPSQGATDVYQYFQLSGFPTTLYDDRTLVTSSMASHLHSSSSSSSSSSAFVTSSQDTSLSSFYSSQIPPWSASAPSSSSSG 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01858 307 MobiDBLite consensus disorder prediction 286 307 - -
Viun9g01858 307 MobiDBLite consensus disorder prediction 87 107 - -
Viun9g01858 307 SUPERFAMILY DNA-binding domain 134 192 IPR016177 GO:0003677
Viun9g01858 307 MobiDBLite consensus disorder prediction 54 75 - -
Viun9g01858 307 Pfam AP2 domain 134 183 IPR001471 GO:0003700|GO:0006355
Viun9g01858 307 PRINTS Ethylene responsive element binding protein signature 135 146 IPR001471 GO:0003700|GO:0006355
Viun9g01858 307 PRINTS Ethylene responsive element binding protein signature 157 173 IPR001471 GO:0003700|GO:0006355
Viun9g01858 307 PANTHER DNA-BINDING DOMAIN 93 281 IPR044808 GO:0003700|GO:0009873
Viun9g01858 307 CDD AP2 134 193 IPR001471 GO:0003700|GO:0006355
Viun9g01858 307 ProSiteProfiles AP2/ERF domain profile. 134 191 IPR001471 GO:0003700|GO:0006355
Viun9g01858 307 SMART rav1_2 134 197 IPR001471 GO:0003700|GO:0006355
Viun9g01858 307 FunFam Ethylene-responsive transcription factor 2 133 192 - -
Viun9g01858 307 Gene3D AP2/ERF domain 133 193 IPR036955 GO:0003700|GO:0006355
Viun9g01858 307 MobiDBLite consensus disorder prediction 53 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01858 Viun-Chr9 28279433 28280909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01858 123 196 AP2-EREBP Transcription Factor Family AT5G61890 78.378 5.09e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun9g01858 AP2 3.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01858 - - pvu:PHAVU_009G137900g 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01858 9 28279433 28280909 Viun9g01858 9 28279433 28280909 ECH
Viun3g00902 3 5586521 5588178 Viun9g01858 9 28279433 28280909 ECH