Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01853 ATGAGATTTAGGGACAAGAAAGAGGCAGCAGAGCCCGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCCTTAAAGGCGTCAGAGAGGGATGTATATGAATTCTTCTCAAAAGCTGGCAAGGTAAGGGATGTCCGTCTAATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTACATTGAGTTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACCAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAATCTTCACTTCAACATGACAGAGAGTCAATTGAGAGAGATTTTTGAGCCATTCGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAGCTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACGGATCATGTCGGAAATCAAGATACAACTGCAAAATCTGCAGACTTTGATGACGATGAGGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAACTGGACCGCTCTGGCATTGCAGCAAGCATTGGTCTGCCTGTTGGGAATGGGTCAACTCCTGCTCAACAGGCTATCATGCCTATTGGTAATCCAGGTGTAATACCAGCACCAGCTGTACCTACGCAAATTGTGCCTACCCCGGTGATTGAACCTGTTGGAAACCCCAGTGAGTGTCTACTGTTGAAGAATATGTTTGATCCCAACACTGAGACAGAGCCAGATTTTGATCTAGACATTAAAGAGGACGTGGAAGAAGAGTGTTCCAAATATGGACGGGTGAAACATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTTGAAGCAGCTAGTGCTGCTCAACGTGCAATGCACACAAGGTGGTTTGCAGGAAGAATGATTTCTGCTATCTATATGCAACCTCAGATATACGAAGCCAAGTTTAAAGGCGACGCTTGA 1161 0.4522 MRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVGNGSTPAQQAIMPIGNPGVIPAPAVPTQIVPTPVIEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIYMQPQIYEAKFKGDA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01853 386 SMART rrm1_1 22 94 IPR000504 GO:0003723
Viun9g01853 386 SMART rrm1_1 293 371 IPR000504 GO:0003723
Viun9g01853 386 SMART rrm1_1 124 197 IPR000504 GO:0003723
Viun9g01853 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Viun9g01853 386 Gene3D - 2 107 IPR012677 -
Viun9g01853 386 CDD RRM3_RBM39_like 291 373 - -
Viun9g01853 386 SUPERFAMILY RNA-binding domain, RBD 123 200 IPR035979 GO:0003676
Viun9g01853 386 CDD RRM2_RBM23_RBM39 125 202 - -
Viun9g01853 386 CDD RRM1_RBM39_like 22 94 - -
Viun9g01853 386 NCBIfam splicing factor, CC1-like family 4 382 IPR006509 GO:0003723|GO:0005634|GO:0006397
Viun9g01853 386 Gene3D - 119 215 IPR012677 -
Viun9g01853 386 SUPERFAMILY RNA-binding domain, RBD 14 102 IPR035979 GO:0003676
Viun9g01853 386 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 382 IPR006509 GO:0003723|GO:0005634|GO:0006397
Viun9g01853 386 SMART rrm2_1 298 371 IPR003954 GO:0003676
Viun9g01853 386 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 216 310 IPR029123 -
Viun9g01853 386 FunFam RNA-binding protein 39 isoform X1 14 106 - -
Viun9g01853 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Viun9g01853 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 195 IPR000504 GO:0003723
Viun9g01853 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 368 IPR000504 GO:0003723
Viun9g01853 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 90 IPR000504 GO:0003723
Viun9g01853 386 FunFam Splicing factor, CC1-like protein 287 386 - -
Viun9g01853 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 98 IPR000504 GO:0003723
Viun9g01853 386 FunFam Splicing factor CC1-like 107 212 - -
Viun9g01853 386 Gene3D - 288 385 IPR012677 -
Viun9g01853 386 SUPERFAMILY RNA-binding domain, RBD 289 374 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01853 Viun-Chr9 28183556 28189862 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01853 95 366 Eukaryotic Initiation Factors Gene Family AT4G34110 24.832 5.11e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01853 K13091 - gmx:100802446 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00899 3 5562116 5570310 Viun9g01853 9 28183556 28189862 ECH
Viun9g01853 9 28183556 28189862 Viun9g01853 9 28183556 28189862 ECH
Viun3g00899 3 5562116 5570310 Viun9g01853 9 28183556 28189862 PCT