Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01852 ATGGACTTTGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAAGATGACCGTGACTCCAGCAGGAAGAAGAAAGAGACGGAAAGGAGCTACCGGAAGCGCGAGGAGATCGACGAGGCCTCGGAGGAGAGGAGGAGCAAGAGGTCAAGGGGCGACGACGAGAATGGCTCGAAGAAGGACAAAGATCGCGAAGAGCGCGACAGGGAGCGCCACAGAAGTAGCAGAGACAGAGATAGAGATAGAGACAGAGATGGCGAGAGAAGTAGCAGGGACAGGGACAGAGACAGAGATAGGGAGAAGGAGAGAGACAAGGAGAGGGATCGGAGGGACAGAGACAAAGATAGAGAGAAGAGGGAGAAGGGGGAGAAGGAGAAGGAGAGGGAAAGGGACAAAGACAGGGAAAAGGAGAGAGATAGAGATAGAGACCGAAGGGACAAAGAACGGGAAGAGAGGGAGAGGTCTCGGAGGAGCAGGAGTCGTTCTGAGCGAGAAAGGGAAAGAGAACGGGATTTCGACACCAGAGATACCAGGAGATTTAGGGACAAGAAAGAGGCAGCAGAGCCCGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCCTTAAAGGCGTCAGAGAGGGATGTATATGAATTCTTCTCAAAAGCTGGCAAGGTAAGGGATGTCCGTCTAATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTACATTGAGTTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACCAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAATCTTCACTTCAACATGACAGAGAGTCAATTGAGAGAGATTTTTGAGCCATTCGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAGCTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACGGATCATGTCGGAAATCAAGATACAACTGCAAAATCTGCAGACTTTGATGACGATGAGGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAACTGGACCGCTCTGGCATTGCAGCAAGCATTGGTCTGCCTGTTGGGAATGGGTCAACTCCTGCTCAACAGGCTATCATGCCTATTGGTAATCCAGGTGTAATACCAGCACCAGCTGTACCTACGCAAATTGTGCCTACCCCGGTGATTGAACCTGTTGGAAACCCCAGTGAGTGTCTACTGTTGAAGAATATGTTTGATCCCAACACTGAGACAGAGCCAGATTTTGATCTAGACATTAAAGAGGACGTGGAAGAAGAGTGTTCCAAATATGGACGGGTGAAACATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTTGAAGCAGCTAGTGCTGCTCAACGTGCAATGCACACAAGGTGGTTTGCAGGAAGAATGATTTCTGCTATCTATATGCAACCTCAGATATACGAAGCCAAGTTTAAAGGCGACGCTTGA 1692 0.4799 MDFDEYDYLEKTVEEQDDRDSSRKKKETERSYRKREEIDEASEERRSKRSRGDDENGSKKDKDREERDRERHRSSRDRDRDRDRDGERSSRDRDRDRDREKERDKERDRRDRDKDREKREKGEKEKERERDKDREKERDRDRDRRDKEREERERSRRSRSRSERERERERDFDTRDTRRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVGNGSTPAQQAIMPIGNPGVIPAPAVPTQIVPTPVIEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIYMQPQIYEAKFKGDA 563
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01852 563 MobiDBLite consensus disorder prediction 1 197 - -
Viun9g01852 563 SMART rrm2_1 475 548 IPR003954 GO:0003676
Viun9g01852 563 NCBIfam splicing factor, CC1-like family 76 559 IPR006509 GO:0003723|GO:0005634|GO:0006397
Viun9g01852 563 MobiDBLite consensus disorder prediction 12 197 - -
Viun9g01852 563 SMART rrm1_1 470 548 IPR000504 GO:0003723
Viun9g01852 563 SMART rrm1_1 199 271 IPR000504 GO:0003723
Viun9g01852 563 SMART rrm1_1 301 374 IPR000504 GO:0003723
Viun9g01852 563 FunFam Splicing factor CC1-like 125 283 - -
Viun9g01852 563 Gene3D - 465 562 IPR012677 -
Viun9g01852 563 CDD RRM1_RBM39_like 199 271 - -
Viun9g01852 563 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 378 IPR000504 GO:0003723
Viun9g01852 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 492 545 IPR000504 GO:0003723
Viun9g01852 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 267 IPR000504 GO:0003723
Viun9g01852 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 302 372 IPR000504 GO:0003723
Viun9g01852 563 CDD RRM2_RBM23_RBM39 302 379 - -
Viun9g01852 563 FunFam Splicing factor CC1-like 284 389 - -
Viun9g01852 563 Gene3D - 128 283 IPR012677 -
Viun9g01852 563 SUPERFAMILY RNA-binding domain, RBD 299 377 IPR035979 GO:0003676
Viun9g01852 563 SUPERFAMILY RNA-binding domain, RBD 191 279 IPR035979 GO:0003676
Viun9g01852 563 Gene3D - 296 392 IPR012677 -
Viun9g01852 563 Coils Coil 145 165 - -
Viun9g01852 563 Coils Coil 112 134 - -
Viun9g01852 563 CDD RRM3_RBM39_like 468 550 - -
Viun9g01852 563 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 393 487 IPR029123 -
Viun9g01852 563 SUPERFAMILY RNA-binding domain, RBD 466 551 IPR035979 GO:0003676
Viun9g01852 563 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 552 IPR000504 GO:0003723
Viun9g01852 563 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 275 IPR000504 GO:0003723
Viun9g01852 563 FunFam Splicing factor, CC1-like protein 464 563 - -
Viun9g01852 563 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 559 IPR006509 GO:0003723|GO:0005634|GO:0006397
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Viun9g01852 Viun-Chr9 28183556 28190337 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01852 272 373 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 7.99e-08 53.1
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01852 K13091 - gmx:100802446 732.635