Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun9g01852 | ATGGACTTTGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAAGATGACCGTGACTCCAGCAGGAAGAAGAAAGAGACGGAAAGGAGCTACCGGAAGCGCGAGGAGATCGACGAGGCCTCGGAGGAGAGGAGGAGCAAGAGGTCAAGGGGCGACGACGAGAATGGCTCGAAGAAGGACAAAGATCGCGAAGAGCGCGACAGGGAGCGCCACAGAAGTAGCAGAGACAGAGATAGAGATAGAGACAGAGATGGCGAGAGAAGTAGCAGGGACAGGGACAGAGACAGAGATAGGGAGAAGGAGAGAGACAAGGAGAGGGATCGGAGGGACAGAGACAAAGATAGAGAGAAGAGGGAGAAGGGGGAGAAGGAGAAGGAGAGGGAAAGGGACAAAGACAGGGAAAAGGAGAGAGATAGAGATAGAGACCGAAGGGACAAAGAACGGGAAGAGAGGGAGAGGTCTCGGAGGAGCAGGAGTCGTTCTGAGCGAGAAAGGGAAAGAGAACGGGATTTCGACACCAGAGATACCAGGAGATTTAGGGACAAGAAAGAGGCAGCAGAGCCCGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCCTTAAAGGCGTCAGAGAGGGATGTATATGAATTCTTCTCAAAAGCTGGCAAGGTAAGGGATGTCCGTCTAATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTACATTGAGTTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTGGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATGCTACCAGTGGAGCTGCTGGGGTAGTAGGACCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAATCTTCACTTCAACATGACAGAGAGTCAATTGAGAGAGATTTTTGAGCCATTCGGTCCAGTGGAGCTTGTGCAACTGCCTCTTGACTTGGAGACAGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAGCTGGAAATTGCTGGCAGGACTATAAAGGTTTCATCTGTAACGGATCATGTCGGAAATCAAGATACAACTGCAAAATCTGCAGACTTTGATGACGATGAGGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAACTGGACCGCTCTGGCATTGCAGCAAGCATTGGTCTGCCTGTTGGGAATGGGTCAACTCCTGCTCAACAGGCTATCATGCCTATTGGTAATCCAGGTGTAATACCAGCACCAGCTGTACCTACGCAAATTGTGCCTACCCCGGTGATTGAACCTGTTGGAAACCCCAGTGAGTGTCTACTGTTGAAGAATATGTTTGATCCCAACACTGAGACAGAGCCAGATTTTGATCTAGACATTAAAGAGGACGTGGAAGAAGAGTGTTCCAAATATGGACGGGTGAAACATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTTGAAGCAGCTAGTGCTGCTCAACGTGCAATGCACACAAGGTGGTTTGCAGGAAGAATGATTTCTGCTATCTATATGCAACCTCAGATATACGAAGCCAAGTTTAAAGGCGACGCTTGA | 1692 | 0.4799 | MDFDEYDYLEKTVEEQDDRDSSRKKKETERSYRKREEIDEASEERRSKRSRGDDENGSKKDKDREERDRERHRSSRDRDRDRDRDGERSSRDRDRDRDREKERDKERDRRDRDKDREKREKGEKEKERERDKDREKERDRDRDRRDKEREERERSRRSRSRSERERERERDFDTRDTRRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGAAGVVGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVGNGSTPAQQAIMPIGNPGVIPAPAVPTQIVPTPVIEPVGNPSECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIYMQPQIYEAKFKGDA | 563 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun9g01852 | 563 | MobiDBLite | consensus disorder prediction | 1 | 197 | - | - | |
| Viun9g01852 | 563 | SMART | rrm2_1 | 475 | 548 | IPR003954 | GO:0003676 | |
| Viun9g01852 | 563 | NCBIfam | splicing factor, CC1-like family | 76 | 559 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Viun9g01852 | 563 | MobiDBLite | consensus disorder prediction | 12 | 197 | - | - | |
| Viun9g01852 | 563 | SMART | rrm1_1 | 470 | 548 | IPR000504 | GO:0003723 | |
| Viun9g01852 | 563 | SMART | rrm1_1 | 199 | 271 | IPR000504 | GO:0003723 | |
| Viun9g01852 | 563 | SMART | rrm1_1 | 301 | 374 | IPR000504 | GO:0003723 | |
| Viun9g01852 | 563 | FunFam | Splicing factor CC1-like | 125 | 283 | - | - | |
| Viun9g01852 | 563 | Gene3D | - | 465 | 562 | IPR012677 | - | |
| Viun9g01852 | 563 | CDD | RRM1_RBM39_like | 199 | 271 | - | - | |
| Viun9g01852 | 563 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 300 | 378 | IPR000504 | GO:0003723 | |
| Viun9g01852 | 563 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 492 | 545 | IPR000504 | GO:0003723 | |
| Viun9g01852 | 563 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 206 | 267 | IPR000504 | GO:0003723 | |
| Viun9g01852 | 563 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 302 | 372 | IPR000504 | GO:0003723 | |
| Viun9g01852 | 563 | CDD | RRM2_RBM23_RBM39 | 302 | 379 | - | - | |
| Viun9g01852 | 563 | FunFam | Splicing factor CC1-like | 284 | 389 | - | - | |
| Viun9g01852 | 563 | Gene3D | - | 128 | 283 | IPR012677 | - | |
| Viun9g01852 | 563 | SUPERFAMILY | RNA-binding domain, RBD | 299 | 377 | IPR035979 | GO:0003676 | |
| Viun9g01852 | 563 | SUPERFAMILY | RNA-binding domain, RBD | 191 | 279 | IPR035979 | GO:0003676 | |
| Viun9g01852 | 563 | Gene3D | - | 296 | 392 | IPR012677 | - | |
| Viun9g01852 | 563 | Coils | Coil | 145 | 165 | - | - | |
| Viun9g01852 | 563 | Coils | Coil | 112 | 134 | - | - | |
| Viun9g01852 | 563 | CDD | RRM3_RBM39_like | 468 | 550 | - | - | |
| Viun9g01852 | 563 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 393 | 487 | IPR029123 | - | |
| Viun9g01852 | 563 | SUPERFAMILY | RNA-binding domain, RBD | 466 | 551 | IPR035979 | GO:0003676 | |
| Viun9g01852 | 563 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 474 | 552 | IPR000504 | GO:0003723 | |
| Viun9g01852 | 563 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 198 | 275 | IPR000504 | GO:0003723 | |
| Viun9g01852 | 563 | FunFam | Splicing factor, CC1-like protein | 464 | 563 | - | - | |
| Viun9g01852 | 563 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 559 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun9g01852 | Viun-Chr9 | 28183556 | 28190337 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun9g01852 | 272 | 373 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 35.922 | 7.99e-08 | 53.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun9g01852 | K13091 | - | gmx:100802446 | 732.635 |