Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01844 ATGGATTTGGACGATTTCCGATCCATATTGGACACCTCGGGCGTCGACGTCTGGATGTTCATCGACGCCGCAATCGCCGTCGCCTCCGCGGACTGCGCCGCCGAATTGAAGCGCCGCCGCGACTCCATCGTGGAGAGCCTCTACTCCGCCACGGCCGCGCCTCCGCAGTGCCGCAATTGTGGCGACGGCCACCGCCTCAGGCCCAACGGCCACCAAGTCGCGAAGCAGAACAGCCCTAGCCCTAGCCCCGAACGGCAACCTCAGCGACGCGCCGCCGCCGCAGCTGCCAATTCCCCCGCTACGCCGCAGTCTCTGGAAAACGATGACGGCGGCGAGGAGTTGGATCCTTACGGTGGTTTGTTTGACGACGAACAGAAGAAGATTCTAGATATTAAAGAACAACTCGAAGAGCCTGACCAGTCTGAAGATTCATTGGTGGAGTTGCTGCAAAGCCTCGCGGACATGGATATTACATTCCAAGCTTTGAAGGAAACTGACATAGGGAGACACGTGAATCGGTTACGGAAGCATCCTTCAAACGACGTTCGTCGATTGGTGAAGCTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGTTGAATCCACAGGGAGGAAGCAACACTCTGATGGCTGATGGAGACTCGCCTGTGCAGAAAACCACCCAAAATGGGCATCATCATCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGCTCAGGCTCTGACCGTAACAACTCAGAAGCAGAACACAAACCGAAGGTAATTCCGCGCAGTGAACCTCGGCGAAAACCCACGCCGGCACCGTCAGTTTCAACCCCTGCATCTGCTTCTCAAAACAGACAAAGGGACAGCGGTTTTGACGCGGAGAGGCTTGCTTCTGCAAGAAGGCGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACTATTCAGGTTATGGACATCAATGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGGAAGAACAAAGGTGGTGGTGGTTCTCAGGGAAGGCACTGGTGA 1062 0.5395 MDLDDFRSILDTSGVDVWMFIDAAIAVASADCAAELKRRRDSIVESLYSATAAPPQCRNCGDGHRLRPNGHQVAKQNSPSPSPERQPQRRAAAAAANSPATPQSLENDDGGEELDPYGGLFDDEQKKILDIKEQLEEPDQSEDSLVELLQSLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGGSNTLMADGDSPVQKTTQNGHHHQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVIPRSEPRRKPTPAPSVSTPASASQNRQRDSGFDAERLASARRRLQENYKEAENAKRQRTIQVMDINELPKSKPKNAFFGKNKGGGGSQGRHW 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01844 353 SMART TFS2_5 128 199 IPR003617 GO:0005634
Viun9g01844 353 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 126 210 IPR035441 -
Viun9g01844 353 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 353 IPR044790 -
Viun9g01844 353 CDD TFIIS_I 125 198 - -
Viun9g01844 353 MobiDBLite consensus disorder prediction 204 353 - -
Viun9g01844 353 Coils Coil 295 322 - -
Viun9g01844 353 ProSiteProfiles TFIIS N-terminal domain profile. 123 200 IPR017923 -
Viun9g01844 353 MobiDBLite consensus disorder prediction 71 85 - -
Viun9g01844 353 MobiDBLite consensus disorder prediction 53 119 - -
Viun9g01844 353 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 209 IPR035441 -
Viun9g01844 353 MobiDBLite consensus disorder prediction 251 267 - -
Viun9g01844 353 Pfam TFIIS helical bundle-like domain 148 197 IPR017923 -
Viun9g01844 353 MobiDBLite consensus disorder prediction 204 231 - -
Viun9g01844 353 MobiDBLite consensus disorder prediction 290 318 - -
Viun9g01844 353 MobiDBLite consensus disorder prediction 275 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01844 Viun-Chr9 28047386 28050568 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Viun9g01844 Med26 3.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01844 - - gmx:100804034 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01844 9 28047386 28050568 Viun9g01844 9 28047386 28050568 ECH
Viun9g01844 9 28047386 28050568 Viun3g00895 3 5514229 5516232 ECH
Viun3g00895 3 5514229 5516232 Viun9g01844 9 28047386 28050568 PCT