Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01834 ATGCTGGAAGTCTATACTTCCCCGGAAACCCCTCTTGAGAACCCGGAGGGAGGCGCCGCCGCGGTCTCCGAGGGGATGAAAGCGGAGGACGGCGAAGGCGGTGACCGGAATTCCGCCGCGAGTCGGTGGCCTAAAGAGGAGACAATGGCCTTGCTCAAGATAAGGTCTGACATGGACGTTGCTTTCAGAGATACAAACCCCAAAGCCCCTCTCTGGGACCAAGTCTCAAAGAAATTAGCGGAGGCGGGTTATAACAGGAGTGCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACCAAGGAAGGTCGTTGTGGCAAATCCAACGGTAGCAAGACTTATAGATTTTTCGAGCAATTGGAAGCTTTAGAAGGACACCACTCACTTCTGACTCCCTCTGTAAGCGCTCCAGAAACAACAACGACGACGACGACGACCCACGTGCCCGACAACAACACCAACGTTGATGTTATTTTAGATGCGGTTCCGTGTTCCGTGAGTGCATACGTGGGGGAGCATTCTAGTTCGACGACTTCGTGCTCGGGGAAGGGGTTTAGGAAGAGGAAGCTGACGCAGTTTCTGGAGGGGTTGATGAGGGAAGTGATAGAGAGGCAAGAGACGCTGCAGAGGAATTTCATGGAGGTGTTGGAGAGGTGCGAGAAGGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAGCTGGCGCTGATCAAGAAAGAGCGGGAGCTTCTGGCTCAGGAGCGGTCCATCGCCGCGGCTAAAGATGAAGTGGTCCTTGCTTTTCTAAGAAAGTTCACCCAAGCTGAAGGCATGGTGCAGTTGCTGGAGAAAATCCAGGGTGAAAACAACAGCCACAGGGACATCCAGCAAAGTGGGAATATCAATGTTACTGCTAATGGAGGTGGTGATAGTGATGTGAGTGATATGGATAAGCGAGAGTGTGGGAATAATATGAGTGTTAGGAATTTGGTGCATATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTGAGGAGTCAACTTGATGTGCAGTCCCAAGGGAACAACAATAGTAGCAGTAATGGTGTGTCGAAGGGGCCACTTTGGGAGGACATATCTTCGGCCATGAAGGGTCTCGGGTACGATCGCAGTGCGAAGAGGTGCAAAGAGAAATGGGAGAACATAAACAAGTATTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAGCCTCAGGATTCGAAAACCTGTCCCTATTATCACCACCTGGAGGTTTTGTACAGCAAGAAGCCTAAGAGGGTTGATGTGAATGATTTTGGGAAGGAGTTGAAGCCGGAGGAGCTGTTAATGCATATCATGGAGAGTCAAAGTCAAGAAGAGAGACAACCTGAGCAACAACAGGGACAGAGTGAGTCATCGTCTGAAGAGGGGGAGAAAGATCAAAATGGGTTTCAGAATGTGATGGTTGAAAATACTCCTTCCATAGCAATCATGATGAGTTAA 1512 0.4974 MLEVYTSPETPLENPEGGAAAVSEGMKAEDGEGGDRNSAASRWPKEETMALLKIRSDMDVAFRDTNPKAPLWDQVSKKLAEAGYNRSAKKCKEKFENIYKYHRRTKEGRCGKSNGSKTYRFFEQLEALEGHHSLLTPSVSAPETTTTTTTTHVPDNNTNVDVILDAVPCSVSAYVGEHSSSTTSCSGKGFRKRKLTQFLEGLMREVIERQETLQRNFMEVLERCEKDRMAREEAWKKEELALIKKERELLAQERSIAAAKDEVVLAFLRKFTQAEGMVQLLEKIQGENNSHRDIQQSGNINVTANGGGDSDVSDMDKRECGNNMSVRNLVHMSSSRWPKDEVEALIRLRSQLDVQSQGNNNSSSNGVSKGPLWEDISSAMKGLGYDRSAKRCKEKWENINKYFKRMKEKNKRKPQDSKTCPYYHHLEVLYSKKPKRVDVNDFGKELKPEELLMHIMESQSQEERQPEQQQGQSESSSEEGEKDQNGFQNVMVENTPSIAIMMS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01834 503 PANTHER FI21293P1 20 480 - -
Viun9g01834 503 MobiDBLite consensus disorder prediction 455 503 - -
Viun9g01834 503 MobiDBLite consensus disorder prediction 1 42 - -
Viun9g01834 503 Coils Coil 242 262 - -
Viun9g01834 503 CDD GT1 41 106 - -
Viun9g01834 503 Gene3D - 43 104 - -
Viun9g01834 503 Gene3D - 337 405 - -
Viun9g01834 503 ProSiteProfiles Myb-like domain profile. 35 99 IPR001005 -
Viun9g01834 503 FunFam Trihelix transcription factor GT-2 337 405 - -
Viun9g01834 503 CDD GT1 335 407 - -
Viun9g01834 503 MobiDBLite consensus disorder prediction 482 496 - -
Viun9g01834 503 SMART sant 39 101 IPR001005 -
Viun9g01834 503 SMART sant 333 402 IPR001005 -
Viun9g01834 503 ProSiteProfiles Myb-like domain profile. 335 400 IPR001005 -
Viun9g01834 503 MobiDBLite consensus disorder prediction 136 157 - -
Viun9g01834 503 MobiDBLite consensus disorder prediction 137 157 - -
Viun9g01834 503 Pfam Myb/SANT-like DNA-binding domain 41 128 IPR044822 -
Viun9g01834 503 Pfam Myb/SANT-like DNA-binding domain 335 427 IPR044822 -
Viun9g01834 503 MobiDBLite consensus disorder prediction 28 42 - -
Viun9g01834 503 FunFam Trihelix transcription factor GT-2 43 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01834 Viun-Chr9 27924619 27927095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01834 335 450 Trihelix Transcription Factor Family AT1G76880 36.207 6.78e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Viun9g01834 Myb_DNA-bind_4 6.3e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01834 - - pvu:PHAVU_009G147500g 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01834 9 27924619 27927095 Viun9g01834 9 27924619 27927095 ECH