Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01832 ATGTATTCTGCTGCTGCTACTTTCTTTCTCCATGACCTTCAGAACTTCCACTCAAGAAGGTTGCTTCTTCACTCCCCACTCAACCAATCAGCCAAGCCCCCAGCAACCCCTCACGATTCCACAGAAACATATCTCGGAGATGGAAACTTCGATGCAAATGTTGTGATGGTACTCTCAGTCCTACTCTGTGCACTCATCTGCTCCTTGGGTTTGAACTCCATCATCAGGTGTGCACTGAGATGTTCCAATTTCGTAGTGAGTGACTCAGTGGCGACCAACACCCCTCCAGCGAGAGTTGCCAACACCGGAGTGAAGAAAAAAGCCCTCAAAACTTTCCCCACAGTGATTTACTCAGCTGAGCTGAACCTCCCGAGTTTGGACTCCGAGTGTGTGATATGTTTGTCAGAGTTCACAAGTGGTGAAAAGGTGCGCATTTTGCCAAAGTGCAACCACGGTTTCCACGTACGCTGCATTGACATGTGGCTCAGTTCACACTCTTCATGCCCCAAATGCAGACACTGCCTCATTGAGACTTGCCAAAAGATTGTTGGGTGCACTCAGCAAGCTAGCTCCTCTCAACAACAACAACAACAACAACCCGTGTTGCAGGTGCCAGAAACCATTCTCACCATTACGCCACTGGAGCCAGAAGGTTTGGTGCGTAACTATAGGGAACTTTAG 681 0.4875 MYSAAATFFLHDLQNFHSRRLLLHSPLNQSAKPPATPHDSTETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSVATNTPPARVANTGVKKKALKTFPTVIYSAELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHVRCIDMWLSSHSSCPKCRHCLIETCQKIVGCTQQASSSQQQQQQQPVLQVPETILTITPLEPEGLVRNYREL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01832 226 FunFam RING-H2 finger protein ATL73 88 177 - -
Viun9g01832 226 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Viun9g01832 226 PANTHER RING-H2 FINGER PROTEIN ATL78 13 219 IPR044602 GO:0016567|GO:0016740
Viun9g01832 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 176 IPR013083 -
Viun9g01832 226 SUPERFAMILY RING/U-box 108 177 - -
Viun9g01832 226 SMART ring_2 130 171 IPR001841 -
Viun9g01832 226 Pfam Ring finger domain 129 172 IPR001841 -
Viun9g01832 226 CDD RING-H2_EL5-like 129 172 - -
Viun9g01832 226 Coils Coil 223 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01832 Viun-Chr9 27887855 27889007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01832 20 176 C3H Transcription Factor Family AT3G10910 47.904 6.19e-45 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01832 K19040 - gmx:100787934 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01832 9 27887855 27889007 Viun9g01832 9 27887855 27889007 ECH
Viun2g01705 2 26614836 26615883 Viun9g01832 9 27887855 27889007 ECH
Viun3g00884 3 5461681 5462533 Viun9g01832 9 27887855 27889007 PCT