Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01827 ATGAAGGCTGTTAAAGGATGGGCAAGGCAAATTTTAAATGGTTTAAATTATCTTCACAGTCACAACCCACCTATTATGCATAGGGACCTGAAGTGCGATAATATATTTATCAATGGTCACCGAGGAGAAGTTAAAATTGGAGATCTAGGGTTGGCAACTCTATTAAAACAAACTAATGCCAAGAGTGTAATTGGAACCCCGGAGTTCATGGCACCTGAACTGTATGATGAACATTATAATGAATTAGTGGACATATATTCTTTTGGGATGTGCATGCTTGAGTTGGTTACGTCTGAATATCCTTACAGTGAATGTAGAAACTCAGCTCAGATATACAAGAAAGTTTCATCTGGCATAAAGCCTGTTGCTCTTTCCAAACTCAAAAATCTAGAAGTAAAATCATTTATTGAGAAATGCCTTGTCCCAGCGTCTCAAAGATTGTCAGCAAAGGAGCTTTTGATGGACAATTTTCTGCAAGTGACTGGTTCATTGAAGAATCGTCGTCTACCATTACCAGATATCGTTCTCCCTAAATATGGAGCCTATGAAAATCGTTGTCTTATGTCAGAAGGTCCTGCTAGCACGCGTATTAGATCCATTTCAATGGATCTTGGTGATGCCACCGAGCAACCATTAACCACTTTACTTTATAATTCTGTTGATTCTATTGTTGATTCTGCTGATGATGTTTTGCCTTCTCCTTGTGTTGAGATAAGAAGGTTAAAGGAAGGTGACATTTTTTTTCTAAAAGGTGAACAGAATGATCAAAAGTCTGTGTCATTAGTTCTCCGCATAGCTGATCAAAGTGGACGGGCAAGAAATATCCATTTCATATTCTACATCAACAGTGATACTGCGATTTCAGTTTCAAGTGAAATGGTTGAGCAACTTGAACTGGCTGAGCACAATGTTAAATTCATAGCAGAGTTGATCGATCTATTATTGACCACATTGCTTCCTGATTGGAAACCTTGTGTACCAATTGATCATTTAGTTACTTGTAATGGTAAATCATCTCAACAAAGTCAACAAACACGAAGCTCAAGAGATTCCATCCAAATTGTGTCTGGAGGTGGTCCAGGTCTCCCAATCTCACGTAGAAGATCAAGAGACAGGGTGAGCAGAGACAGGGTGAGCAGAGATAGGGTGAGCAGAGATAGGGTGAGCAGAGATATTGTCATTTCTGAGAAGGTTTTATCTAACACAAGCATTAGCCTTCAAGGAGATGCAAAGATAGACGACTCTTGTTCTGAGACGTCACAAACTGGTGCAACATTTGACTTCAACGAAAAGCATTTTTCTACAGTTTCATTCATGTCTGCTAAATCAGGATTTACAGACTTTGACTTGCACAGAGTTAATAGTCAAACCTCACTTGTATCTGAATTCGAGGCGTCGTCCGAGTATAGGAATTTTCCACGTGCGGAAAGCTATGGTACCATGAAATTCTTTAACTACCCCATGAATGCTCCCCCCTCCTTCAATGAAGCTGAGGATGAGTTGAGAACAGAGTTAGAGATGATTGAACAACAATATCAAGAAGCAATTAGAGATTTATCAAAAAGAAGATATCAGGCCATTACTGAGGCTAGGAGGAAGGTGTCACAGAAATTTCCAAACTTTAAATAA 1629 0.3917 MKAVKGWARQILNGLNYLHSHNPPIMHRDLKCDNIFINGHRGEVKIGDLGLATLLKQTNAKSVIGTPEFMAPELYDEHYNELVDIYSFGMCMLELVTSEYPYSECRNSAQIYKKVSSGIKPVALSKLKNLEVKSFIEKCLVPASQRLSAKELLMDNFLQVTGSLKNRRLPLPDIVLPKYGAYENRCLMSEGPASTRIRSISMDLGDATEQPLTTLLYNSVDSIVDSADDVLPSPCVEIRRLKEGDIFFLKGEQNDQKSVSLVLRIADQSGRARNIHFIFYINSDTAISVSSEMVEQLELAEHNVKFIAELIDLLLTTLLPDWKPCVPIDHLVTCNGKSSQQSQQTRSSRDSIQIVSGGGPGLPISRRRSRDRVSRDRVSRDRVSRDRVSRDIVISEKVLSNTSISLQGDAKIDDSCSETSQTGATFDFNEKHFSTVSFMSAKSGFTDFDLHRVNSQTSLVSEFEASSEYRNFPRAESYGTMKFFNYPMNAPPSFNEAEDELRTELEMIEQQYQEAIRDLSKRRYQAITEARRKVSQKFPNFK 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01827 542 Pfam Protein kinase domain 2 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g01827 542 ProSiteProfiles Protein kinase domain profile. 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g01827 542 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 259 312 IPR024678 GO:0004674|GO:0005524
Viun9g01827 542 FunFam Serine/threonine-protein kinase WNK8 257 351 - -
Viun9g01827 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 25 37 IPR008271 GO:0004672|GO:0006468
Viun9g01827 542 Gene3D - 257 346 - -
Viun9g01827 542 Coils Coil 494 522 - -
Viun9g01827 542 SUPERFAMILY Protein kinase-like (PK-like) 3 159 IPR011009 -
Viun9g01827 542 SMART serkin_6 1 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g01827 542 MobiDBLite consensus disorder prediction 365 381 - -
Viun9g01827 542 MobiDBLite consensus disorder prediction 338 354 - -
Viun9g01827 542 MobiDBLite consensus disorder prediction 338 381 - -
Viun9g01827 542 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 523 - -
Viun9g01827 542 Gene3D Transferase(Phosphotransferase) domain 1 1 164 - -
Viun9g01827 542 FunFam probable serine/threonine-protein kinase WNK9 1 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01827 Viun-Chr9 27826675 27829060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01827 1 375 MAP Kinase Kinase Kinase AT1G49160 61.867 1.32e-165 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Viun9g01827 Pkinase 5e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01827 K08867 - gmx:121175054 730.324