Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01823 ATGGTAAGAGCAAGGGACGATCTATGCATCAACGTTCCCACTTTCTTCAAGTGCCCTATTTCCCTTGATGTCATGAAATCCCCTGTCAGCCTCTGCACCGGAGTCACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACGCCGGCAATAACACCTGCCCCGCAACCATGCAACTCCTCCAAACCAAAGACTTCGTTCCCAACCGAACTCTACAGAGCCTCATCCAGATCTGGTCCGATTCTCTTCGCCACTCAAATCTCCTCTCCCCGGACCAGCTCCTACTAACCGTCGCTCAATTGGAAACCCACTCTCTCCGCTCCGCTTCGCTCACCAAACTCCTCCACTTCGCCACAGATTCTCACCACAACAAACTCTTCCTTGCCAAACTAGAAGGCTTCGTCAACCAACTCGTCCGTTTCCTCAACAATGTCGACGACGGAGGACTCATCGTCAGAGCTAACATTCAATTTCTCGAACAAGTTGTTCTTCTGTTAGGTCTGATTCTCGACAGCGTCGAAGATCGTGATGGATTGAGAAGCTCTTTGCTCAAAGGAAACAAGCAAAGCCTAGATTCTCTGCTTCTCGTTCTGCAGCGAGGAGGCTGCGATTCGAGAATCGCCTCCGCCAGGATTCTGCAGTTCATCGCCGCGGACGCCGAGTCGAAGATTTTATTAGCCGAGAAGGAAGGCGTGGTCGCGGAACTGCTGAAATCGGCGGCGCCGGAGAACGATCCGGCGCTGGTCGAGGCCGCGCTGGCGAGCCTGATCGCGATTTCGGCGCCGAAGCGGAACAAACTGAAGCTGGTGAGTCTCGGCGCGGTGAAGGCGCTGTCGAGGCTGTTGGCGGAGGCGAAGCTGGGAGCGGCGGCGGTGGAGAAGGTGCTGAAGCTGGTGGAGGCGGCGTCGTCGACGAGGGAGGGGCGGAAGGAGATATGCGAGGACGCGGCGTGCGTGGCGGCGGTGCTGAGCAAGGTTCTGAAGGTGTCTAGCGTGGCAACGGAGCATGCGGTGACTACGCTGTGGAGCGTGTGCTACCTGTTTCGCGATCGCAAGGCACAGGAGGCAGTGACGCAGGCCAATGGCTTGACCAAGATTCTGTTGCTGATGCAGAGCAACTGTGCGCCGCAAGTGCGCCAAATGTGCACCGATTTGCTCAAGATTTTTCGGGTGAACTCCAAGTCATGCCTCACCTGCTACGACACCAAGACCACGCATATCATGCCGTTTTGA 1230 0.565 MVRARDDLCINVPTFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDAGNNTCPATMQLLQTKDFVPNRTLQSLIQIWSDSLRHSNLLSPDQLLLTVAQLETHSLRSASLTKLLHFATDSHHNKLFLAKLEGFVNQLVRFLNNVDDGGLIVRANIQFLEQVVLLLGLILDSVEDRDGLRSSLLKGNKQSLDSLLLVLQRGGCDSRIASARILQFIAADAESKILLAEKEGVVAELLKSAAPENDPALVEAALASLIAISAPKRNKLKLVSLGAVKALSRLLAEAKLGAAAVEKVLKLVEAASSTREGRKEICEDAACVAAVLSKVLKVSSVATEHAVTTLWSVCYLFRDRKAQEAVTQANGLTKILLLMQSNCAPQVRQMCTDLLKIFRVNSKSCLTCYDTKTTHIMPF 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01823 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 89 IPR013083 -
Viun9g01823 409 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Viun9g01823 409 Gene3D - 288 388 IPR011989 -
Viun9g01823 409 Gene3D - 183 287 IPR011989 -
Viun9g01823 409 FunFam RING-type E3 ubiquitin transferase 4 84 - -
Viun9g01823 409 SUPERFAMILY ARM repeat 94 391 IPR016024 -
Viun9g01823 409 Pfam U-box domain 12 80 IPR003613 GO:0004842|GO:0016567
Viun9g01823 409 SUPERFAMILY RING/U-box 6 80 - -
Viun9g01823 409 CDD RING-Ubox_PUB 13 65 IPR045210 -
Viun9g01823 409 PANTHER WDSAM1 PROTEIN 11 396 IPR045185 GO:0061630
Viun9g01823 409 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01823 Viun-Chr9 27807415 27809247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01823 5 409 U-box Gene Family AT5G64660 50.358 3.61e-140 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01823 - - gmx:100801033 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01823 9 27807415 27809247 Viun9g01823 9 27807415 27809247 ECH
Viun9g01823 9 27807415 27809247 Viun3g00872 3 5386221 5387655 ECH
Viun3g00872 3 5386221 5387655 Viun9g01823 9 27807415 27809247 PCT