Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01811 ATGAGTGGAAGTGGCAAAAAGCGGTCTTCAAAGTGGGATTTGAGAGTTGATCCTGAATTTTCACCTGATGATAGTAAGCAATTACGGCCTGGGTGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCGAAGTGGTCCTATTTGGAAGGAAGTGATAAATTAAAGCCTGATATGGGATTTTCATCCAAGGAACCTTTTTCTGGAGGCAGAGGTTCACATAAGGATGATGTTATGAATAAAGACTATGGAGGTTTGGATGCAACAATGGAATGGGATGAGGATGGTTACAGCAAGAAAATTTCCCCTGGATCTGAGGAATGGAAACCTAAGAGACACAGTCAATCTCCTAAAAATGGTTGGAGCAGGTCAGTCAGGAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAATCAATGACAGAAATAGAATGCGGGCTGGAGGATCAACACAACCATGTAGAGACTTTGCTGCTGGTAAATGCAGAAGAGGTAGCCATTGCCACTTTCTTCATGATAGTCAAAATCATGAGGATAGTTGGGAAAATAAGAGTAGGGAAGATGGAGCTCCTAGATATTCTGTTCCCCAAGAGGGTAGAGACTATTCTCTTAAGAGTGGCAGATCTAATGAAGCTTGTACTAATTTTGCAAAGGGAAGGTGTAGAATGGGAGCATCATGCAAGTTTGTGCATCATGACAATTCTGATGGACATGGTAAAGTTTCTGTGGATGAATTAAATAGAGAGAGGGAAATTGATAGAAGGCACAGAGATAGTTCTTTTGAGCAGGGAGGCGGACATGGACCAAACCGTAGTAGTGATACTCTTTGCAAGTTTTTTGCCAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGAGATGATAGGTGGCCAAGCAATCCTGGGGGAGATCACCATAGGATGGATAGACCAAAATTGAGTGATTCAGATAGTCCTAATAGAAGGCCAAGGGATGATAGGTGGGGTTCAGATGGTAACAAGGCTGATGCAGATAAAATTTGGGACAGTCCAAAGTGGAATGATACAGTTGCTGTCTCTGATTCAGCAAAGCTGGTTGAGGGCAAAAGTGAAAATGTTGGTGCCACAGAGCCAGGATTCACATCGTTACCTACAAGTTATGGATGGAGTCATAGTTTGGATAAGAGCCGAGTGCATGGCGAGCAGCCTTTTTCAAGTGATAAGAAGGAAGTTAACAGTTGGGTATCAGGAAGTACTGCCACCAACATTCATGCTTCCCAGTCAATAGGTACAGACATTTGGTTGGGTGATACAAAAATGTCTCCTGATTGGCATTACAGGGTGGGATCTTCCAACACCATTGAAGAAAAGCATGAGCAAAATAAGCGTGGGATAAAACAAGGTGGTACGTATTTAGCCACCTCTGAACGTGACAGAGTACAAATTGCTGCAGGACAAGGCACTAATCAGAATGCAGAGAGTTTGAATCCTTTGCATTCTTCAGGCTTGCAAGCGGTTGGACAAAGTCAGGTCCCAGTTCCTATTCTACCTTCAAAGGGAGGAATTGTCGATGGTATGCCAAACCAGGAAGTCTCCATTGAGAAAAAATACACTGCTGAACCAAATATCATGGATGCTGGCTTATCACAAGTTAGTTCAAGAAATCCTCCTCCCACTGAGAATCTGGTAGGCCAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCTCTGGCCCATATCCTTGGGACAGGGCAACAGCTACCGGAACTTTATGCTGCTTTAAATTCTCACTATGCCAAGGACACATCCTCCCTAGCAAAAGCTGAGGTGTCTGCTGTGCCTGTTTCCAATACATTCATCCGCTCTGATCTTGCTGTGCCTGTTTCCAATACATTCATCCACCCTGATCCTGCTGTTGGACTCCCGAAGCAGTACGATCCAATGAGTGATAGTGTTGAGCCAAAGAGTGCTGTTGCAAGTGGGGTATCCTCATCCATTCCTCCTCCAAGTAAAAGAGTTGCAGAAGATGTACTTGAAATTCCATCACAGTTGTCCAACACATCAAGACAAAATCATGGTGATTCTTCCAAGGCTGCTGGTCCAGAAGAACTAGTAAAGAGTGATCCTCTAGTTCAGTTGCAGCCAGGTCAAAACACTGAAGTTGGTAAAGATGATAACAAGGAAATGTTACCCGAGGAAAGACACAAATCTCGAGATGATCCTAAAAGTACCAAAGAGAATGGTCCTTTGGAAAACATGGAGCAAACTGGAGGTCCTGATGAGTCCAAGAAAACAAAGGATTTAAAGGGGATTCGTGCATTTAAATTTGCACTGGTTGAGTTTGTTAAGGAGCTTCTGAAACCAACATGGAAAGAAGGTCAAATCACCAAAGATGATTATAAAACAATCGTGAAGAAAGTTGTTGATAAAGTAACTGGTTCCATGCAGGGGGCCAATATTCCTCAGACTCAAGAGAAAATTGACAACTATTTGTCATTTTCAAAACCAAAGCTTAATAAACTTGTACAGGCGTATGTGGAAAAGGTTCAGAAGGCTTAG 2592 0.4306 MSGSGKKRSSKWDLRVDPEFSPDDSKQLRPGWSSADVAGSNSSKWSYLEGSDKLKPDMGFSSKEPFSGGRGSHKDDVMNKDYGGLDATMEWDEDGYSKKISPGSEEWKPKRHSQSPKNGWSRSVRSRSRSPPHGFRWDSGINDRNRMRAGGSTQPCRDFAAGKCRRGSHCHFLHDSQNHEDSWENKSREDGAPRYSVPQEGRDYSLKSGRSNEACTNFAKGRCRMGASCKFVHHDNSDGHGKVSVDELNREREIDRRHRDSSFEQGGGHGPNRSSDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRLRDDRWPSNPGGDHHRMDRPKLSDSDSPNRRPRDDRWGSDGNKADADKIWDSPKWNDTVAVSDSAKLVEGKSENVGATEPGFTSLPTSYGWSHSLDKSRVHGEQPFSSDKKEVNSWVSGSTATNIHASQSIGTDIWLGDTKMSPDWHYRVGSSNTIEEKHEQNKRGIKQGGTYLATSERDRVQIAAGQGTNQNAESLNPLHSSGLQAVGQSQVPVPILPSKGGIVDGMPNQEVSIEKKYTAEPNIMDAGLSQVSSRNPPPTENLVGQEQLAQLTNLSASLAHILGTGQQLPELYAALNSHYAKDTSSLAKAEVSAVPVSNTFIRSDLAVPVSNTFIHPDPAVGLPKQYDPMSDSVEPKSAVASGVSSSIPPPSKRVAEDVLEIPSQLSNTSRQNHGDSSKAAGPEELVKSDPLVQLQPGQNTEVGKDDNKEMLPEERHKSRDDPKSTKENGPLENMEQTGGPDESKKTKDLKGIRAFKFALVEFVKELLKPTWKEGQITKDDYKTIVKKVVDKVTGSMQGANIPQTQEKIDNYLSFSKPKLNKLVQAYVEKVQKA 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01811 863 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 862 - -
Viun9g01811 863 MobiDBLite consensus disorder prediction 693 712 - -
Viun9g01811 863 SUPERFAMILY CCCH zinc finger 275 298 IPR036855 GO:0046872
Viun9g01811 863 ProSiteProfiles Zinc finger C3H1-type profile. 273 300 IPR000571 GO:0046872
Viun9g01811 863 ProSiteProfiles Zinc finger C3H1-type profile. 150 177 IPR000571 GO:0046872
Viun9g01811 863 MobiDBLite consensus disorder prediction 234 275 - -
Viun9g01811 863 ProSiteProfiles Zinc finger C3H1-type profile. 209 236 IPR000571 GO:0046872
Viun9g01811 863 MobiDBLite consensus disorder prediction 171 196 - -
Viun9g01811 863 MobiDBLite consensus disorder prediction 654 682 - -
Viun9g01811 863 Pfam RNA-binding, Nab2-type zinc finger 214 233 - -
Viun9g01811 863 MobiDBLite consensus disorder prediction 718 778 - -
Viun9g01811 863 MobiDBLite consensus disorder prediction 171 209 - -
Viun9g01811 863 MobiDBLite consensus disorder prediction 304 359 - -
Viun9g01811 863 MobiDBLite consensus disorder prediction 234 264 - -
Viun9g01811 863 Gene3D - 146 250 - -
Viun9g01811 863 SMART c3hfinal6 150 176 IPR000571 GO:0046872
Viun9g01811 863 SMART c3hfinal6 273 299 IPR000571 GO:0046872
Viun9g01811 863 SMART c3hfinal6 210 235 IPR000571 GO:0046872
Viun9g01811 863 MobiDBLite consensus disorder prediction 114 128 - -
Viun9g01811 863 Pfam CCCH-type zinc finger 278 298 IPR041367 -
Viun9g01811 863 MobiDBLite consensus disorder prediction 34 48 - -
Viun9g01811 863 MobiDBLite consensus disorder prediction 91 113 - -
Viun9g01811 863 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 153 175 IPR000571 GO:0046872
Viun9g01811 863 MobiDBLite consensus disorder prediction 1 154 - -
Viun9g01811 863 Gene3D - 269 328 - -
Viun9g01811 863 MobiDBLite consensus disorder prediction 8 24 - -
Viun9g01811 863 MobiDBLite consensus disorder prediction 732 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01811 Viun-Chr9 27657490 27666483 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun9g01811 zf-CCCH 3.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01811 - K22909 gmx:100783856 1385.55